Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47424 * 2 1 4 4 H 1.08997 * 109.47084 * 305.00139 * 3 2 1 5 5 C 1.53003 * 109.47046 * 184.99884 * 3 2 1 6 6 N 1.46503 * 109.46863 * 65.00322 * 3 2 1 7 7 C 1.38857 * 119.99817 * 205.00168 * 6 3 2 8 8 C 1.39569 * 119.83958 * 359.72329 * 7 6 3 9 9 C 1.36342 * 120.15718 * 179.71825 * 8 7 6 10 10 C 1.40880 * 119.83586 * 0.55688 * 9 8 7 11 11 C 1.41142 * 120.15417 * 179.69685 * 10 9 8 12 12 H 1.07996 * 120.00115 * 204.62560 * 11 10 9 13 13 C 1.39871 * 119.99952 * 24.63402 * 11 10 9 14 14 N 1.30899 * 120.00203 * 17.94519 * 13 11 10 15 15 Si 1.86804 * 119.99786 * 197.95608 * 13 11 10 16 16 H 1.48501 * 109.47112 * 59.99250 * 15 13 11 17 17 H 1.48496 * 109.47193 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46877 * 299.99430 * 15 13 11 19 19 C 1.40879 * 119.69326 * 359.71838 * 10 9 8 20 20 C 1.36340 * 119.83568 * 0.02562 * 19 10 9 21 21 H 1.09002 * 109.47262 * 59.99591 * 1 2 3 22 22 H 1.08996 * 109.47595 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47021 * 300.00143 * 1 2 3 24 24 H 1.09000 * 109.47021 * 239.99857 * 2 1 3 25 25 H 1.09002 * 109.47262 * 120.00409 * 2 1 3 26 26 H 1.08997 * 109.47388 * 300.00069 * 5 3 2 27 27 H 1.08997 * 109.46680 * 60.00362 * 5 3 2 28 28 H 1.08998 * 109.46811 * 180.02562 * 5 3 2 29 29 H 0.96993 * 120.00308 * 24.99852 * 6 3 2 30 30 H 1.08002 * 119.92238 * 359.97438 * 8 7 6 31 31 H 1.08003 * 120.08110 * 180.27424 * 9 8 7 32 32 H 0.96997 * 120.00251 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.08404 * 179.97438 * 19 10 9 34 34 H 1.07997 * 119.92404 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 1.5219 3.4789 1.3011 8 6 1.7662 4.2408 0.1575 9 6 1.6343 5.5973 0.1971 10 6 1.2618 6.2305 1.3992 11 6 1.1295 7.6348 1.4493 12 1 1.2407 8.1544 2.3895 13 6 0.8543 8.3535 0.2814 14 7 0.3772 7.7363 -0.7698 15 14 1.1678 10.1941 0.2216 16 1 2.6066 10.4596 0.4758 17 1 0.7977 10.7159 -1.1185 18 1 0.3487 10.8696 1.2599 19 6 1.0224 5.4556 2.5511 20 6 1.1531 4.0996 2.4956 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.9995 0.9052 0.7161 27 1 3.8532 0.9569 -1.0571 28 1 3.9283 2.4718 -0.1252 29 1 1.4872 1.5660 2.0463 30 1 2.0564 3.7544 -0.7620 31 1 1.8193 6.1852 -0.6898 32 1 0.1867 8.2346 -1.5799 33 1 0.7370 5.9345 3.4760 34 1 0.9703 3.5042 3.3779 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = 5.204824 kcal Electronic energy + Delta-G solvation = -14464.089861 eV Core-core repulsion = 12167.825361 eV Total energy + Delta-G solvation = -2296.264500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.26913 -36.28975 -33.59514 -31.70821 -29.75248 -29.25951 -27.95553 -24.46746 -23.24701 -21.61752 -20.56711 -19.36373 -17.16894 -16.31276 -15.34635 -14.87759 -13.91872 -13.79215 -13.74110 -13.22246 -12.79836 -12.48414 -12.26004 -11.92626 -11.64386 -11.57744 -11.40713 -11.04278 -10.98300 -10.81426 -10.66914 -10.40688 -10.35330 -9.66726 -9.23090 -9.15481 -8.49436 -7.44261 -6.59946 -6.32561 -3.98749 2.96704 3.14397 3.16576 3.19847 3.40370 4.08411 4.38262 4.80567 4.98407 5.25830 5.30576 5.66503 5.78488 5.84224 5.92793 5.98677 6.05102 6.12938 6.30217 6.32670 6.39400 6.43930 6.60386 6.98427 7.01980 7.24802 7.40301 7.62012 7.73993 7.89805 8.19499 8.35038 8.56072 8.76931 8.86494 9.10300 9.20334 10.41526 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.048414 B = 0.006398 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.210884 B = 4375.203150 C = 4518.545043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.156 3.844 4 H 0.072 0.928 5 C -0.167 4.167 6 N -0.754 5.754 7 C 0.097 3.903 8 C -0.165 4.165 9 C -0.124 4.124 10 C 0.072 3.928 11 C -0.468 4.468 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.809 5.809 15 Si 0.902 3.098 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.186 4.186 20 C -0.162 4.162 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.382 0.618 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.276 0.724 33 H 0.090 0.910 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -9.762 -0.513 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.050 3.950 4 H 0.090 0.910 5 C -0.226 4.226 6 N -0.389 5.389 7 C 0.000 4.000 8 C -0.187 4.187 9 C -0.144 4.144 10 C 0.070 3.930 11 C -0.499 4.499 12 H 0.089 0.911 13 C -0.140 4.140 14 N -0.436 5.436 15 Si 0.728 3.272 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.207 4.207 20 C -0.184 4.184 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.214 0.786 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.168 -9.701 -0.946 9.985 hybrid contribution 0.011 0.670 0.185 0.695 sum 2.179 -9.031 -0.761 9.321 Atomic orbital electron populations 1.21726 0.95590 1.00663 1.02656 1.21786 0.96405 0.96642 1.01789 1.20636 0.93355 0.91988 0.89066 0.91050 1.22312 0.97445 1.02373 1.00492 1.43957 1.80768 1.03709 1.10463 1.17360 1.05851 0.82385 0.94452 1.20127 1.08618 0.94573 0.95405 1.20936 1.01618 0.92498 0.99319 1.17485 0.91281 0.93238 0.91042 1.19326 1.44144 0.91925 0.94548 0.91058 1.25782 0.92608 1.00392 0.95221 1.69847 1.32189 1.38104 1.03499 0.86475 0.79846 0.83038 0.77877 1.19125 1.20617 1.19297 1.20533 1.08923 0.92521 0.98698 1.19802 1.08784 0.94884 0.94937 0.92765 0.93448 0.92182 0.91527 0.92170 0.93171 0.93074 0.92015 0.78586 0.89312 0.86469 0.91331 0.89170 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.80 37.16 0.36 -1.45 16 2 C -0.13 -1.53 5.47 -26.73 -0.15 -1.68 16 3 C 0.16 2.35 2.26 -67.93 -0.15 2.19 16 4 H 0.07 1.19 6.46 -51.93 -0.34 0.86 16 5 C -0.17 -2.36 9.40 37.16 0.35 -2.01 16 6 N -0.75 -13.17 4.67 -52.03 -0.24 -13.41 16 7 C 0.10 2.12 6.65 -83.69 -0.56 1.57 16 8 C -0.17 -3.92 8.73 -39.77 -0.35 -4.26 16 9 C -0.12 -3.29 8.64 -39.27 -0.34 -3.63 16 10 C 0.07 1.99 5.57 -106.80 -0.60 1.40 16 11 C -0.47 -12.93 9.03 -37.87 -0.34 -13.27 16 12 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 13 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 14 N -0.81 -21.79 10.96 55.54 0.61 -21.18 16 15 Si 0.90 19.49 29.60 -169.99 -5.03 14.46 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 19 C -0.19 -4.71 9.74 -39.27 -0.38 -5.09 16 20 C -0.16 -3.70 9.82 -39.77 -0.39 -4.09 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.81 7.75 -51.93 -0.40 0.40 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.01 7.63 -51.93 -0.40 0.61 16 29 H 0.38 6.03 8.60 -40.82 -0.35 5.67 16 30 H 0.09 1.93 6.02 -52.49 -0.32 1.61 16 31 H 0.12 3.23 6.16 -52.48 -0.32 2.91 16 32 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 33 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 280.59 15.07 4.23 4.23 Total: -1.00 -28.00 280.59 -8.12 -36.12 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.06 Total: 8.22 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -2.63 Total: -28.44 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.37 Total: -34.59 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.00 -8.12 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.322 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds