Wall clock time and date at job start Mon Mar 30 2020 02:29:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53001 * 109.47424 * 2 1
4 4 H 1.08997 * 109.47084 * 305.00139 * 3 2 1
5 5 C 1.53003 * 109.47046 * 184.99884 * 3 2 1
6 6 N 1.46503 * 109.46863 * 65.00322 * 3 2 1
7 7 C 1.38857 * 119.99817 * 205.00168 * 6 3 2
8 8 C 1.39569 * 119.83958 * 359.72329 * 7 6 3
9 9 C 1.36342 * 120.15718 * 179.71825 * 8 7 6
10 10 C 1.40880 * 119.83586 * 0.55688 * 9 8 7
11 11 C 1.41142 * 120.15417 * 179.69685 * 10 9 8
12 12 H 1.07996 * 120.00115 * 204.62560 * 11 10 9
13 13 C 1.39871 * 119.99952 * 24.63402 * 11 10 9
14 14 N 1.30899 * 120.00203 * 17.94519 * 13 11 10
15 15 Si 1.86804 * 119.99786 * 197.95608 * 13 11 10
16 16 H 1.48501 * 109.47112 * 59.99250 * 15 13 11
17 17 H 1.48496 * 109.47193 * 179.97438 * 15 13 11
18 18 H 1.48505 * 109.46877 * 299.99430 * 15 13 11
19 19 C 1.40879 * 119.69326 * 359.71838 * 10 9 8
20 20 C 1.36340 * 119.83568 * 0.02562 * 19 10 9
21 21 H 1.09002 * 109.47262 * 59.99591 * 1 2 3
22 22 H 1.08996 * 109.47595 * 180.02562 * 1 2 3
23 23 H 1.09000 * 109.47021 * 300.00143 * 1 2 3
24 24 H 1.09000 * 109.47021 * 239.99857 * 2 1 3
25 25 H 1.09002 * 109.47262 * 120.00409 * 2 1 3
26 26 H 1.08997 * 109.47388 * 300.00069 * 5 3 2
27 27 H 1.08997 * 109.46680 * 60.00362 * 5 3 2
28 28 H 1.08998 * 109.46811 * 180.02562 * 5 3 2
29 29 H 0.96993 * 120.00308 * 24.99852 * 6 3 2
30 30 H 1.08002 * 119.92238 * 359.97438 * 8 7 6
31 31 H 1.08003 * 120.08110 * 180.27424 * 9 8 7
32 32 H 0.96997 * 120.00251 * 180.02562 * 14 13 11
33 33 H 1.08002 * 120.08404 * 179.97438 * 19 10 9
34 34 H 1.07997 * 119.92404 * 179.97438 * 20 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5649 1.4442 -0.1257
6 7 1.6525 2.0974 1.2519
7 6 1.5219 3.4789 1.3011
8 6 1.7662 4.2408 0.1575
9 6 1.6343 5.5973 0.1971
10 6 1.2618 6.2305 1.3992
11 6 1.1295 7.6348 1.4493
12 1 1.2407 8.1544 2.3895
13 6 0.8543 8.3535 0.2814
14 7 0.3772 7.7363 -0.7698
15 14 1.1678 10.1941 0.2216
16 1 2.6066 10.4596 0.4758
17 1 0.7977 10.7159 -1.1185
18 1 0.3487 10.8696 1.2599
19 6 1.0224 5.4556 2.5511
20 6 1.1531 4.0996 2.4956
21 1 -0.3634 0.5139 -0.8900
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3633 0.5139 0.8900
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 3.9995 0.9052 0.7161
27 1 3.8532 0.9569 -1.0571
28 1 3.9283 2.4718 -0.1252
29 1 1.4872 1.5660 2.0463
30 1 2.0564 3.7544 -0.7620
31 1 1.8193 6.1852 -0.6898
32 1 0.1867 8.2346 -1.5799
33 1 0.7370 5.9345 3.4760
34 1 0.9703 3.5042 3.3779
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000037071395.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:29:05
Heat of formation + Delta-G solvation = 5.204824 kcal
Electronic energy + Delta-G solvation = -14464.089861 eV
Core-core repulsion = 12167.825361 eV
Total energy + Delta-G solvation = -2296.264500 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 219.132 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.26913 -36.28975 -33.59514 -31.70821 -29.75248 -29.25951 -27.95553 -24.46746
-23.24701 -21.61752 -20.56711 -19.36373 -17.16894 -16.31276 -15.34635 -14.87759
-13.91872 -13.79215 -13.74110 -13.22246 -12.79836 -12.48414 -12.26004 -11.92626
-11.64386 -11.57744 -11.40713 -11.04278 -10.98300 -10.81426 -10.66914 -10.40688
-10.35330 -9.66726 -9.23090 -9.15481 -8.49436 -7.44261 -6.59946 -6.32561
-3.98749 2.96704 3.14397 3.16576 3.19847 3.40370 4.08411 4.38262
4.80567 4.98407 5.25830 5.30576 5.66503 5.78488 5.84224 5.92793
5.98677 6.05102 6.12938 6.30217 6.32670 6.39400 6.43930 6.60386
6.98427 7.01980 7.24802 7.40301 7.62012 7.73993 7.89805 8.19499
8.35038 8.56072 8.76931 8.86494 9.10300 9.20334 10.41526
Molecular weight = 219.13amu
Principal moments of inertia in cm(-1)
A = 0.048414 B = 0.006398 C = 0.006195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 578.210884 B = 4375.203150 C = 4518.545043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.128 4.128
3 C 0.156 3.844
4 H 0.072 0.928
5 C -0.167 4.167
6 N -0.754 5.754
7 C 0.097 3.903
8 C -0.165 4.165
9 C -0.124 4.124
10 C 0.072 3.928
11 C -0.468 4.468
12 H 0.071 0.929
13 C 0.075 3.925
14 N -0.809 5.809
15 Si 0.902 3.098
16 H -0.266 1.266
17 H -0.281 1.281
18 H -0.268 1.268
19 C -0.186 4.186
20 C -0.162 4.162
21 H 0.053 0.947
22 H 0.046 0.954
23 H 0.059 0.941
24 H 0.066 0.934
25 H 0.060 0.940
26 H 0.049 0.951
27 H 0.050 0.950
28 H 0.061 0.939
29 H 0.382 0.618
30 H 0.089 0.911
31 H 0.118 0.882
32 H 0.276 0.724
33 H 0.090 0.910
34 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.218 -9.762 -0.513 10.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.166 4.166
3 C 0.050 3.950
4 H 0.090 0.910
5 C -0.226 4.226
6 N -0.389 5.389
7 C 0.000 4.000
8 C -0.187 4.187
9 C -0.144 4.144
10 C 0.070 3.930
11 C -0.499 4.499
12 H 0.089 0.911
13 C -0.140 4.140
14 N -0.436 5.436
15 Si 0.728 3.272
16 H -0.191 1.191
17 H -0.206 1.206
18 H -0.193 1.193
19 C -0.207 4.207
20 C -0.184 4.184
21 H 0.072 0.928
22 H 0.066 0.934
23 H 0.078 0.922
24 H 0.085 0.915
25 H 0.078 0.922
26 H 0.068 0.932
27 H 0.069 0.931
28 H 0.080 0.920
29 H 0.214 0.786
30 H 0.107 0.893
31 H 0.135 0.865
32 H 0.087 0.913
33 H 0.108 0.892
34 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 2.168 -9.701 -0.946 9.985
hybrid contribution 0.011 0.670 0.185 0.695
sum 2.179 -9.031 -0.761 9.321
Atomic orbital electron populations
1.21726 0.95590 1.00663 1.02656 1.21786 0.96405 0.96642 1.01789
1.20636 0.93355 0.91988 0.89066 0.91050 1.22312 0.97445 1.02373
1.00492 1.43957 1.80768 1.03709 1.10463 1.17360 1.05851 0.82385
0.94452 1.20127 1.08618 0.94573 0.95405 1.20936 1.01618 0.92498
0.99319 1.17485 0.91281 0.93238 0.91042 1.19326 1.44144 0.91925
0.94548 0.91058 1.25782 0.92608 1.00392 0.95221 1.69847 1.32189
1.38104 1.03499 0.86475 0.79846 0.83038 0.77877 1.19125 1.20617
1.19297 1.20533 1.08923 0.92521 0.98698 1.19802 1.08784 0.94884
0.94937 0.92765 0.93448 0.92182 0.91527 0.92170 0.93171 0.93074
0.92015 0.78586 0.89312 0.86469 0.91331 0.89170 0.89723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.82 9.80 37.16 0.36 -1.45 16
2 C -0.13 -1.53 5.47 -26.73 -0.15 -1.68 16
3 C 0.16 2.35 2.26 -67.93 -0.15 2.19 16
4 H 0.07 1.19 6.46 -51.93 -0.34 0.86 16
5 C -0.17 -2.36 9.40 37.16 0.35 -2.01 16
6 N -0.75 -13.17 4.67 -52.03 -0.24 -13.41 16
7 C 0.10 2.12 6.65 -83.69 -0.56 1.57 16
8 C -0.17 -3.92 8.73 -39.77 -0.35 -4.26 16
9 C -0.12 -3.29 8.64 -39.27 -0.34 -3.63 16
10 C 0.07 1.99 5.57 -106.80 -0.60 1.40 16
11 C -0.47 -12.93 9.03 -37.87 -0.34 -13.27 16
12 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16
13 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16
14 N -0.81 -21.79 10.96 55.54 0.61 -21.18 16
15 Si 0.90 19.49 29.60 -169.99 -5.03 14.46 16
16 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16
17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16
18 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16
19 C -0.19 -4.71 9.74 -39.27 -0.38 -5.09 16
20 C -0.16 -3.70 9.82 -39.77 -0.39 -4.09 16
21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
23 H 0.06 0.81 7.75 -51.93 -0.40 0.40 16
24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.06 1.01 7.63 -51.93 -0.40 0.61 16
29 H 0.38 6.03 8.60 -40.82 -0.35 5.67 16
30 H 0.09 1.93 6.02 -52.49 -0.32 1.61 16
31 H 0.12 3.23 6.16 -52.48 -0.32 2.91 16
32 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16
33 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16
34 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16
LS Contribution 280.59 15.07 4.23 4.23
Total: -1.00 -28.00 280.59 -8.12 -36.12
By element:
Atomic # 1 Polarization: 13.28 SS G_CDS: -5.06 Total: 8.22 kcal
Atomic # 6 Polarization: -25.82 SS G_CDS: -2.63 Total: -28.44 kcal
Atomic # 7 Polarization: -34.95 SS G_CDS: 0.37 Total: -34.59 kcal
Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -28.00 -8.12 -36.12 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037071395.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.322 kcal
(2) G-P(sol) polarization free energy of solvation -27.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds