Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 N 1.46900 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.46907 * 110.99846 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46969 * 34.99964 * 5 4 3 7 7 C 1.50700 * 109.47128 * 274.99689 * 5 4 3 8 8 H 1.07997 * 119.99610 * 125.30840 * 7 5 4 9 9 C 1.37878 * 119.99979 * 305.31481 * 7 5 4 10 10 N 1.31514 * 120.00188 * 9.59275 * 9 7 5 11 11 Si 1.86806 * 119.99588 * 189.60042 * 9 7 5 12 12 H 1.48497 * 109.47118 * 89.99788 * 11 9 7 13 13 H 1.48496 * 109.46678 * 209.99779 * 11 9 7 14 14 H 1.48504 * 109.46820 * 329.99425 * 11 9 7 15 15 C 1.50698 * 109.46775 * 154.99749 * 5 4 3 16 16 C 1.38239 * 120.00289 * 32.59155 * 15 5 4 17 17 C 1.38237 * 120.00325 * 179.97438 * 16 15 5 18 18 C 1.38230 * 119.99600 * 359.95193 * 17 16 15 19 19 C 1.38231 * 120.00362 * 0.02562 * 18 17 16 20 20 C 1.38230 * 120.00173 * 212.56022 * 15 5 4 21 21 H 1.08993 * 109.47303 * 300.00532 * 1 2 3 22 22 H 1.09007 * 109.47290 * 60.00338 * 1 2 3 23 23 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47423 * 239.99907 * 2 1 3 25 25 H 1.08997 * 109.46753 * 119.99571 * 2 1 3 26 26 H 1.08999 * 109.47126 * 59.99726 * 3 2 1 27 27 H 1.09001 * 109.47274 * 299.99833 * 3 2 1 28 28 H 1.00903 * 111.00074 * 303.95347 * 4 3 2 29 29 H 0.96998 * 119.99380 * 180.02562 * 10 9 7 30 30 H 1.08007 * 119.99643 * 359.97276 * 16 15 5 31 31 H 1.07997 * 119.99951 * 179.97438 * 17 16 15 32 32 H 1.08003 * 119.99397 * 179.71905 * 18 17 16 33 33 H 1.08007 * 119.99931 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.99944 * 0.02562 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0354 2.8141 0.0000 6 1 3.3794 3.4553 0.5888 7 6 4.1004 3.3265 -1.4157 8 1 3.6110 4.2530 -1.6775 9 6 4.7846 2.6126 -2.3765 10 7 5.2181 1.3998 -2.1103 11 14 5.0959 3.3682 -4.0564 12 1 6.3867 4.1020 -4.0375 13 1 5.1523 2.2935 -5.0796 14 1 3.9960 4.3095 -4.3872 15 6 5.4172 2.8219 0.6011 16 6 6.2494 1.7306 0.4353 17 6 7.5172 1.7380 0.9862 18 6 7.9532 2.8371 1.7022 19 6 7.1213 3.9286 1.8677 20 6 5.8530 3.9206 1.3178 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9564 -0.8900 28 1 3.8702 0.9165 0.7822 29 1 5.6998 0.8978 -2.7863 30 1 5.9090 0.8721 -0.1248 31 1 8.1671 0.8852 0.8569 32 1 8.9420 2.8410 2.1364 33 1 7.4618 4.7872 2.4274 34 1 5.2029 4.7734 1.4474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055015908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = 22.595454 kcal Electronic energy + Delta-G solvation = -14848.813265 eV Core-core repulsion = 12553.302879 eV Total energy + Delta-G solvation = -2295.510386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.31435 -35.75020 -33.35627 -31.34194 -29.92905 -29.43996 -26.51276 -24.30474 -22.22744 -21.43181 -20.39031 -19.80144 -16.30839 -15.72087 -14.99701 -14.57886 -14.16429 -14.00451 -13.57039 -12.91523 -12.79232 -12.42967 -12.12262 -11.92095 -11.62563 -11.34903 -10.94974 -10.81891 -10.74238 -10.51417 -10.19921 -10.07281 -9.84140 -9.55501 -9.23021 -8.42487 -7.86371 -7.48118 -6.77912 -5.80222 -3.98338 2.42785 2.52454 3.34612 3.41178 3.43876 4.48630 4.91207 5.26576 5.44783 5.57607 5.70164 5.77099 5.87872 5.95912 6.09086 6.20702 6.32486 6.36483 6.42126 6.53310 6.61356 6.72311 6.86561 6.96393 7.02842 7.10793 7.23485 7.45079 7.63244 7.90852 7.94886 8.18872 8.25612 8.50871 8.88978 9.14237 9.67572 11.13498 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.012369 C = 0.008592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.659091 B = 2263.248666 C = 3258.115407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.073 3.927 4 N -0.642 5.642 5 C 0.250 3.750 6 H -0.002 1.002 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.090 3.910 10 N -0.827 5.827 11 Si 0.877 3.123 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.042 4.042 16 C -0.080 4.080 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.141 4.141 20 C -0.133 4.133 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.049 0.951 26 H -0.002 1.002 27 H 0.068 0.932 28 H 0.305 0.695 29 H 0.253 0.747 30 H 0.160 0.840 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -1.320 5.453 5.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.057 4.057 4 N -0.272 5.272 5 C 0.142 3.858 6 H 0.016 0.984 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.117 4.117 10 N -0.460 5.460 11 Si 0.705 3.295 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.043 4.043 16 C -0.098 4.098 17 C -0.162 4.162 18 C -0.171 4.171 19 C -0.159 4.159 20 C -0.152 4.152 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.016 0.984 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.177 0.823 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.316 -1.559 4.677 5.102 hybrid contribution 0.242 0.852 -0.187 0.905 sum -1.074 -0.707 4.490 4.670 Atomic orbital electron populations 1.21730 0.96909 1.00609 1.01295 1.21485 0.94171 0.98189 1.01850 1.21778 0.90559 0.94564 0.98823 1.60792 1.03729 1.15848 1.46842 1.18149 0.86859 0.85948 0.94812 0.98433 1.20831 1.35114 1.07496 0.92588 0.92874 1.24836 0.95126 0.94171 0.97571 1.70016 1.34576 1.08567 1.32850 0.86866 0.78631 0.79138 0.84877 1.20843 1.21315 1.20127 1.20557 0.99378 0.92598 0.91771 1.21768 0.92154 1.00801 0.95105 1.21163 0.97342 0.97805 0.99846 1.20813 0.98854 0.95084 1.02346 1.20796 0.94871 0.98000 1.02232 1.20913 0.96046 0.98468 0.99782 0.93473 0.92901 0.93476 0.91244 0.93256 0.98375 0.91357 0.87873 0.93691 0.82312 0.87886 0.88165 0.87976 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.02 6.19 -26.73 -0.17 -2.18 16 3 C 0.07 1.46 5.48 -3.82 -0.02 1.44 16 4 N -0.64 -14.58 4.34 -109.18 -0.47 -15.05 16 5 C 0.25 6.09 2.49 -70.01 -0.17 5.91 16 6 H 0.00 -0.05 7.73 -51.93 -0.40 -0.45 16 7 C -0.52 -14.09 8.62 -34.44 -0.30 -14.39 16 8 H 0.05 1.45 7.83 -52.49 -0.41 1.04 16 9 C 0.09 2.43 5.20 -17.82 -0.09 2.34 16 10 N -0.83 -22.12 9.23 55.43 0.51 -21.61 16 11 Si 0.88 21.13 29.55 -169.99 -5.02 16.11 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C -0.04 -0.97 4.65 -104.63 -0.49 -1.46 16 16 C -0.08 -1.82 7.66 -39.58 -0.30 -2.12 16 17 C -0.14 -2.91 10.05 -39.58 -0.40 -3.30 16 18 C -0.15 -2.89 10.05 -39.59 -0.40 -3.28 16 19 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 20 C -0.13 -2.84 9.69 -39.59 -0.38 -3.23 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.00 -0.03 8.06 -51.93 -0.42 -0.45 16 27 H 0.07 1.50 8.00 -51.93 -0.42 1.09 16 28 H 0.30 6.59 7.68 -39.29 -0.30 6.29 16 29 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.16 3.87 5.59 -52.48 -0.29 3.58 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 280.59 15.07 4.23 4.23 Total: -1.00 -27.17 280.59 -8.69 -35.86 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.18 Total: 5.55 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.75 Total: -25.09 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.04 Total: -36.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.17 -8.69 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.456 kcal (2) G-P(sol) polarization free energy of solvation -27.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds