Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47391 * 2 1 4 4 C 1.46906 * 110.99976 * 74.69620 * 3 2 1 5 5 C 1.46901 * 110.99957 * 198.64520 * 3 2 1 6 6 H 1.09009 * 109.47035 * 83.86241 * 5 3 2 7 7 C 1.50709 * 109.47297 * 203.85833 * 5 3 2 8 8 H 1.07992 * 119.99631 * 115.92389 * 7 5 3 9 9 C 1.37877 * 119.99637 * 295.92949 * 7 5 3 10 10 N 1.31515 * 120.00670 * 4.69740 * 9 7 5 11 11 Si 1.86801 * 119.99436 * 184.69759 * 9 7 5 12 12 H 1.48496 * 109.47381 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47077 * 119.99907 * 11 9 7 14 14 H 1.48498 * 109.46936 * 239.99858 * 11 9 7 15 15 C 1.50695 * 109.47658 * 323.85976 * 5 3 2 16 16 C 1.38234 * 119.99982 * 320.76337 * 15 5 3 17 17 C 1.38231 * 120.00269 * 179.80849 * 16 15 5 18 18 C 1.38239 * 119.99908 * 0.38815 * 17 16 15 19 19 C 1.38241 * 119.99636 * 359.86245 * 18 17 16 20 20 C 1.38230 * 120.00282 * 359.95356 * 19 18 17 21 21 H 1.08992 * 109.47574 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46808 * 300.00122 * 1 2 3 23 23 H 1.09007 * 109.46736 * 59.99452 * 1 2 3 24 24 H 1.09002 * 109.47215 * 240.00104 * 2 1 3 25 25 H 1.09001 * 109.47216 * 120.00030 * 2 1 3 26 26 H 1.09000 * 109.47241 * 196.18827 * 4 3 2 27 27 H 1.08994 * 109.46843 * 316.18618 * 4 3 2 28 28 H 1.09002 * 109.46997 * 76.18912 * 4 3 2 29 29 H 0.96991 * 120.00359 * 180.02562 * 10 9 7 30 30 H 1.08002 * 119.99855 * 359.97438 * 16 15 5 31 31 H 1.08002 * 120.00319 * 180.22469 * 17 16 15 32 32 H 1.07995 * 120.00649 * 179.83350 * 18 17 16 33 33 H 1.07998 * 119.99678 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.99942 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8539 2.0020 1.3229 5 6 3.4203 1.4480 -0.4385 6 1 3.4597 1.4634 -1.5277 7 6 4.0610 2.6992 0.1050 8 1 4.8775 2.6261 0.8081 9 6 3.6046 3.9371 -0.2953 10 7 2.5520 4.0283 -1.0785 11 14 4.4815 5.4849 0.2747 12 1 5.6287 5.1133 1.1413 13 1 4.9771 6.2365 -0.9063 14 1 3.5362 6.3353 1.0417 15 6 4.1622 0.2406 0.0740 16 6 3.9064 -0.2398 1.3448 17 6 4.5840 -1.3497 1.8134 18 6 5.5232 -1.9746 1.0144 19 6 5.7826 -1.4911 -0.2545 20 6 5.1023 -0.3834 -0.7245 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9476 3.0842 1.2333 27 1 0.8691 1.7540 1.7185 28 1 2.6222 1.6255 1.9982 29 1 2.2312 4.8991 -1.3604 30 1 3.1753 0.2506 1.9704 31 1 4.3816 -1.7272 2.8049 32 1 6.0545 -2.8402 1.3814 33 1 6.5166 -1.9790 -0.8786 34 1 5.3047 -0.0060 -1.7160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = 43.063513 kcal Electronic energy + Delta-G solvation = -15287.392067 eV Core-core repulsion = 12992.769243 eV Total energy + Delta-G solvation = -2294.622824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17599 -36.32896 -32.72586 -30.99463 -30.23267 -29.12310 -26.53419 -25.13623 -22.57389 -21.87738 -20.74326 -19.30532 -16.41311 -16.10447 -15.01122 -14.67670 -14.28338 -14.04276 -13.72983 -13.24059 -12.84697 -12.54770 -11.91848 -11.76211 -11.57984 -11.23937 -11.06147 -10.93346 -10.81291 -10.49870 -10.37569 -10.17567 -9.77095 -9.73092 -9.22279 -8.41367 -8.23667 -7.82777 -6.67080 -5.98004 -4.10643 2.04888 2.10367 3.27495 3.36874 3.41219 4.37039 4.54060 5.12563 5.47584 5.52287 5.58624 5.63526 5.84887 5.85362 6.11517 6.16308 6.26957 6.28195 6.42672 6.61504 6.65488 6.68537 6.75476 6.83738 6.93158 7.09870 7.13902 7.27031 7.42431 7.68460 7.74446 7.83287 8.06620 8.58162 8.75968 9.04212 9.55187 11.05001 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.011866 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.776981 B = 2359.189185 C = 3040.925887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.036 3.964 3 N -0.504 5.504 4 C 0.051 3.949 5 C 0.243 3.757 6 H 0.053 0.947 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.079 3.921 10 N -0.846 5.846 11 Si 0.882 3.118 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C -0.061 4.061 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.148 4.148 19 C -0.127 4.127 20 C -0.123 4.123 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.017 0.983 29 H 0.258 0.742 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -7.877 3.010 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 N -0.227 5.227 4 C -0.097 4.097 5 C 0.138 3.862 6 H 0.071 0.929 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.128 4.128 10 N -0.481 5.481 11 Si 0.710 3.290 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.063 4.063 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.166 4.166 19 C -0.145 4.145 20 C -0.142 4.142 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.324 -7.469 2.555 7.900 hybrid contribution 1.005 0.386 0.864 1.380 sum 1.329 -7.082 3.419 7.976 Atomic orbital electron populations 1.21771 0.96827 0.99383 1.01936 1.22313 0.94681 0.92741 0.99470 1.62613 1.21507 1.12536 1.26013 1.22188 0.95889 1.02041 0.89602 1.18585 0.82600 0.88660 0.96389 0.92903 1.20892 1.18154 0.89394 1.28247 0.92514 1.24959 0.94371 0.98587 0.94853 1.70143 1.21431 1.23758 1.32725 0.86700 0.79990 0.83674 0.78668 1.19781 1.20910 1.20970 1.21385 0.94978 0.96719 0.93243 1.21460 1.00107 0.96545 0.96419 1.21028 0.97620 0.97059 0.99111 1.20871 0.99935 1.00698 0.95137 1.21008 1.00110 0.97350 0.96044 1.21071 0.97133 0.95768 1.00179 0.94136 0.93398 0.92406 0.92643 0.95308 0.90463 0.95582 0.96478 0.93174 0.85417 0.87364 0.87443 0.87247 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.01 37.16 0.37 -2.10 16 2 C 0.04 0.73 4.44 -3.83 -0.02 0.71 16 3 N -0.50 -11.69 4.33 -237.68 -1.03 -12.72 16 4 C 0.05 1.13 7.96 60.07 0.48 1.61 16 5 C 0.24 5.96 2.32 -70.01 -0.16 5.80 16 6 H 0.05 1.43 8.02 -51.92 -0.42 1.02 16 7 C -0.53 -13.96 6.83 -34.44 -0.24 -14.19 16 8 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 9 C 0.08 2.10 4.09 -17.82 -0.07 2.03 16 10 N -0.85 -23.46 12.54 55.43 0.69 -22.76 16 11 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.06 -1.32 3.68 -104.63 -0.38 -1.70 16 16 C -0.13 -2.53 6.82 -39.59 -0.27 -2.80 16 17 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 18 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 19 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 20 C -0.12 -2.41 9.67 -39.58 -0.38 -2.79 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.82 6.69 -51.93 -0.35 0.47 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 25 H 0.03 0.56 5.03 -51.93 -0.26 0.30 16 26 H 0.08 1.94 6.07 -51.93 -0.32 1.62 16 27 H 0.03 0.52 6.46 -51.93 -0.34 0.18 16 28 H 0.02 0.38 4.91 -51.93 -0.25 0.12 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 30 H 0.13 2.57 4.01 -52.49 -0.21 2.36 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.12 2.18 8.04 -52.49 -0.42 1.76 16 LS Contribution 267.11 15.07 4.03 4.03 Total: -1.00 -27.56 267.11 -7.82 -35.38 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.62 Total: 1.86 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -1.87 Total: -21.44 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.33 Total: -35.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.56 -7.82 -35.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.440 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds