Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47391 * 2 1 4 4 C 1.46906 * 110.99976 * 74.69620 * 3 2 1 5 5 C 1.46901 * 110.99957 * 198.64520 * 3 2 1 6 6 H 1.09009 * 109.47035 * 83.86241 * 5 3 2 7 7 C 1.50709 * 109.47297 * 203.85833 * 5 3 2 8 8 H 1.07992 * 119.99631 * 115.92389 * 7 5 3 9 9 C 1.37877 * 119.99637 * 295.92949 * 7 5 3 10 10 N 1.31515 * 120.00670 * 4.69740 * 9 7 5 11 11 Si 1.86801 * 119.99436 * 184.69759 * 9 7 5 12 12 H 1.48496 * 109.47381 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47077 * 119.99907 * 11 9 7 14 14 H 1.48498 * 109.46936 * 239.99858 * 11 9 7 15 15 C 1.50695 * 109.47658 * 323.85976 * 5 3 2 16 16 C 1.38234 * 119.99982 * 320.76337 * 15 5 3 17 17 C 1.38231 * 120.00269 * 179.80849 * 16 15 5 18 18 C 1.38239 * 119.99908 * 0.38815 * 17 16 15 19 19 C 1.38241 * 119.99636 * 359.86245 * 18 17 16 20 20 C 1.38230 * 120.00282 * 359.95356 * 19 18 17 21 21 H 1.08992 * 109.47574 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46808 * 300.00122 * 1 2 3 23 23 H 1.09007 * 109.46736 * 59.99452 * 1 2 3 24 24 H 1.09002 * 109.47215 * 240.00104 * 2 1 3 25 25 H 1.09001 * 109.47216 * 120.00030 * 2 1 3 26 26 H 1.09000 * 109.47241 * 196.18827 * 4 3 2 27 27 H 1.08994 * 109.46843 * 316.18618 * 4 3 2 28 28 H 1.09002 * 109.46997 * 76.18912 * 4 3 2 29 29 H 0.96991 * 120.00359 * 180.02562 * 10 9 7 30 30 H 1.08002 * 119.99855 * 359.97438 * 16 15 5 31 31 H 1.08002 * 120.00319 * 180.22469 * 17 16 15 32 32 H 1.07995 * 120.00649 * 179.83350 * 18 17 16 33 33 H 1.07998 * 119.99678 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.99942 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8539 2.0020 1.3229 5 6 3.4203 1.4480 -0.4385 6 1 3.4597 1.4634 -1.5277 7 6 4.0610 2.6992 0.1050 8 1 4.8775 2.6261 0.8081 9 6 3.6046 3.9371 -0.2953 10 7 2.5520 4.0283 -1.0785 11 14 4.4815 5.4849 0.2747 12 1 5.6287 5.1133 1.1413 13 1 4.9771 6.2365 -0.9063 14 1 3.5362 6.3353 1.0417 15 6 4.1622 0.2406 0.0740 16 6 3.9064 -0.2398 1.3448 17 6 4.5840 -1.3497 1.8134 18 6 5.5232 -1.9746 1.0144 19 6 5.7826 -1.4911 -0.2545 20 6 5.1023 -0.3834 -0.7245 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9476 3.0842 1.2333 27 1 0.8691 1.7540 1.7185 28 1 2.6222 1.6255 1.9982 29 1 2.2312 4.8991 -1.3604 30 1 3.1753 0.2506 1.9704 31 1 4.3816 -1.7272 2.8049 32 1 6.0545 -2.8402 1.3814 33 1 6.5166 -1.9790 -0.8786 34 1 5.3047 -0.0060 -1.7160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = 27.094531 kcal Electronic energy + Delta-G solvation = -15288.084534 eV Core-core repulsion = 12992.769243 eV Total energy + Delta-G solvation = -2295.315291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73692 -37.93701 -34.66111 -32.62404 -31.65475 -30.71819 -28.34585 -26.96795 -24.26585 -23.32598 -22.28181 -20.99053 -18.38429 -17.66146 -16.65255 -16.43743 -15.87931 -15.62211 -15.32152 -14.87410 -14.46669 -14.09124 -13.60129 -13.39368 -13.22654 -12.86689 -12.75758 -12.61509 -12.44756 -12.23865 -12.04010 -11.80590 -11.51991 -11.40630 -11.11524 -10.46627 -9.66377 -9.34998 -8.43019 -8.02652 -6.21098 0.62593 0.66682 1.38953 1.42907 1.52537 2.43644 3.03793 3.18040 3.80166 4.13184 4.19773 4.29117 4.30745 4.35489 4.61114 4.72105 4.73981 4.82367 4.84936 5.05991 5.08510 5.18153 5.21939 5.28287 5.42640 5.46116 5.60401 5.68093 5.72027 5.79089 6.03906 6.08037 6.30909 6.66290 6.90336 7.14013 7.47931 9.00112 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.011866 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.776981 B = 2359.189185 C = 3040.925887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.041 3.959 3 N -0.524 5.524 4 C 0.061 3.939 5 C 0.248 3.752 6 H 0.010 0.990 7 C -0.535 4.535 8 H 0.043 0.957 9 C 0.040 3.960 10 N -0.876 5.876 11 Si 0.941 3.059 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.279 1.279 15 C -0.087 4.087 16 C -0.141 4.141 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.122 4.122 20 C -0.144 4.144 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.020 0.980 29 H 0.258 0.742 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -9.712 4.411 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 N -0.247 5.247 4 C -0.087 4.087 5 C 0.142 3.858 6 H 0.028 0.972 7 C -0.574 4.574 8 H 0.061 0.939 9 C -0.164 4.164 10 N -0.512 5.512 11 Si 0.767 3.233 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.204 1.204 15 C -0.089 4.089 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.140 4.140 20 C -0.162 4.162 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.024 -9.311 3.961 10.170 hybrid contribution 0.830 0.851 0.427 1.263 sum 1.854 -8.460 4.387 9.708 Atomic orbital electron populations 1.21711 0.94733 1.01272 1.01419 1.22310 0.96215 0.90849 0.99348 1.62407 1.20991 1.14808 1.26482 1.22024 0.97206 0.99965 0.89457 1.18216 0.83938 0.89739 0.93899 0.97239 1.21026 1.17718 0.90773 1.27847 0.93912 1.25558 0.94863 1.01079 0.94927 1.70248 1.22710 1.24229 1.33967 0.85792 0.78906 0.80465 0.78181 1.19764 1.20654 1.20447 1.21106 0.96435 0.96629 0.94762 1.21413 1.00952 0.97860 0.95641 1.21388 0.96823 0.95734 1.00549 1.21355 0.98882 1.01112 0.94261 1.21357 0.99712 0.95987 0.96906 1.21177 0.97748 0.97254 1.00059 0.91028 0.93013 0.93755 0.93778 0.94288 0.93630 0.93370 0.96216 0.93260 0.86247 0.84224 0.83385 0.84040 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 10.01 71.98 0.72 -3.78 16 2 C 0.04 1.62 4.44 86.30 0.38 2.00 16 3 N -0.52 -24.93 4.33 -905.89 -3.92 -28.85 16 4 C 0.06 2.79 7.96 127.69 1.02 3.80 16 5 C 0.25 12.69 2.32 43.42 0.10 12.79 16 6 H 0.01 0.56 8.02 -2.38 -0.02 0.55 16 7 C -0.53 -29.30 6.83 25.60 0.17 -29.12 16 8 H 0.04 2.40 7.75 -2.91 -0.02 2.38 16 9 C 0.04 2.17 4.09 84.65 0.35 2.51 16 10 N -0.88 -50.23 12.54 21.45 0.27 -49.96 16 11 Si 0.94 43.41 29.54 68.60 2.03 45.44 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 C -0.09 -3.81 3.68 -19.87 -0.07 -3.88 16 16 C -0.14 -5.44 6.82 22.27 0.15 -5.29 16 17 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 18 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 19 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 20 C -0.14 -5.63 9.67 22.27 0.22 -5.41 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.05 1.68 6.69 -2.39 -0.02 1.67 16 23 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 25 H 0.04 1.48 5.03 -2.39 -0.01 1.47 16 26 H 0.04 2.34 6.07 -2.39 -0.01 2.32 16 27 H 0.05 1.91 6.46 -2.39 -0.02 1.90 16 28 H 0.02 0.88 4.91 -2.39 -0.01 0.86 16 29 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.12 4.73 4.01 -2.91 -0.01 4.72 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.11 4.24 8.04 -2.91 -0.02 4.22 16 Total: -1.00 -60.97 267.11 3.15 -57.81 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.08 Total: 12.92 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 3.71 Total: -37.35 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -3.66 Total: -78.81 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -60.97 3.15 -57.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.907 kcal (2) G-P(sol) polarization free energy of solvation -60.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds