Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48500 * 109.47648 * 240.00221 * 3 2 1 5 5 H 1.48506 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47388 * 119.99607 * 3 2 1 7 7 C 1.37881 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00152 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99820 * 0.02562 * 7 2 1 10 10 O 1.42106 * 106.40190 * 66.45843 * 9 7 2 11 11 O 1.42096 * 106.40148 * 293.53678 * 9 7 2 12 12 N 1.65594 * 107.21675 * 179.97438 * 9 7 2 13 13 C 1.47057 * 125.40881 * 90.00176 * 12 9 7 14 14 C 1.54105 * 103.99235 * 179.97438 * 13 12 9 15 15 N 1.47394 * 103.70056 * 0.10684 * 14 13 12 16 16 C 1.33947 * 109.21036 * 359.88525 * 15 14 13 17 17 O 1.21594 * 123.03846 * 180.09410 * 16 15 14 18 18 H 0.97001 * 119.99991 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.54831 * 298.59334 * 13 12 9 20 20 H 1.08997 * 110.54826 * 61.25808 * 13 12 9 21 21 H 1.08996 * 110.55034 * 118.66113 * 14 13 12 22 22 H 1.09001 * 110.54910 * 241.47819 * 14 13 12 23 23 H 0.97000 * 125.37712 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2484 -3.9353 0.0005 13 6 2.8271 -4.5607 1.1991 14 6 3.8011 -5.6141 0.6364 15 7 3.6684 -5.4672 -0.8242 16 6 2.7763 -4.5044 -1.0911 17 8 2.4729 -4.1767 -2.2221 18 1 -0.4850 0.8401 -0.0004 19 1 3.3649 -3.8225 1.7940 20 1 2.0492 -5.0377 1.7953 21 1 4.8218 -5.3987 0.9522 22 1 3.5054 -6.6150 0.9506 23 1 4.1500 -5.9866 -1.4869 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059846351.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = -104.799742 kcal Electronic energy + Delta-G solvation = -13633.796601 eV Core-core repulsion = 10995.280701 eV Total energy + Delta-G solvation = -2638.515899 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.54947 -36.20520 -35.15033 -34.07941 -33.24321 -32.83590 -28.59648 -26.20114 -22.88194 -22.12112 -18.80539 -17.89060 -16.99023 -16.26936 -16.06652 -15.19371 -14.69592 -14.01770 -13.98164 -13.45317 -13.37851 -12.45877 -12.21962 -12.00132 -11.39167 -11.20714 -10.93224 -10.63294 -10.37782 -10.27203 -9.75534 -9.48267 -9.26966 -8.95537 -8.73218 -6.75075 -5.38310 1.85528 3.08307 3.11957 3.17342 3.39794 3.58757 4.05263 4.37508 4.57826 4.69268 5.00983 5.15472 5.49800 5.68691 5.73169 5.90374 6.22375 6.72123 7.25997 7.27091 7.59951 7.88531 8.74742 8.83048 10.20068 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.011648 C = 0.011332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.066398 B = 2403.299416 C = 2470.258235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.011 5.011 8 H 0.103 0.897 9 S 2.705 3.295 10 O -0.961 6.961 11 O -0.986 6.986 12 N -0.953 5.953 13 C 0.091 3.909 14 C 0.095 3.905 15 N -0.742 5.742 16 C 0.710 3.290 17 O -0.542 6.542 18 H 0.294 0.706 19 H 0.096 0.904 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.818 -7.937 4.278 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.086 4.086 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.188 1.188 7 C -1.145 5.145 8 H 0.121 0.879 9 S 2.806 3.194 10 O -0.951 6.951 11 O -0.977 6.977 12 N -0.794 5.794 13 C -0.034 4.034 14 C -0.031 4.031 15 N -0.406 5.406 16 C 0.408 3.592 17 O -0.414 6.414 18 H 0.104 0.896 19 H 0.114 0.886 20 H 0.114 0.886 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 7.408 -7.734 3.681 11.324 hybrid contribution 1.251 0.883 -0.091 1.534 sum 8.659 -6.851 3.590 11.611 Atomic orbital electron populations 1.69874 1.06782 1.31128 1.39532 1.24764 0.94582 1.00862 0.88359 0.86094 0.79813 0.79166 0.79855 1.18721 1.19945 1.18758 1.30297 1.05995 1.10779 1.67469 0.87870 1.01275 0.71850 0.72937 0.73338 1.93453 1.70904 1.86317 1.44465 1.93390 1.71302 1.87178 1.45812 1.57886 1.57670 1.51858 1.11962 1.22343 0.97073 0.95910 0.88120 1.22410 1.00204 0.99614 0.80844 1.45438 1.46321 1.40829 1.08033 1.15840 0.79189 0.79640 0.84529 1.91113 1.64232 1.66074 1.20013 0.89586 0.88608 0.88620 0.89862 0.89971 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.01 13.19 55.43 0.73 -24.28 14 2 C 0.13 3.76 5.46 -17.82 -0.10 3.66 14 3 Si 0.93 20.79 29.54 -169.99 -5.02 15.77 14 4 H -0.26 -5.79 7.11 56.52 0.40 -5.39 14 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 14 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 14 7 C -1.01 -28.61 9.75 30.60 0.30 -28.31 14 8 H 0.10 2.67 7.81 -52.49 -0.41 2.26 14 9 S 2.70 74.92 5.11 -107.50 -0.55 74.37 14 10 O -0.96 -30.45 16.46 -65.28 -1.07 -31.53 14 11 O -0.99 -28.23 17.59 -57.17 -1.01 -29.24 14 12 N -0.95 -20.48 3.34 -64.70 -0.22 -20.70 14 13 C 0.09 1.33 7.32 -3.16 -0.02 1.31 14 14 C 0.10 1.00 8.08 -2.98 -0.02 0.98 14 15 N -0.74 -10.58 6.39 -64.46 -0.41 -10.99 14 16 C 0.71 15.02 8.55 -88.40 -0.76 14.26 14 17 O -0.54 -14.08 16.49 -13.93 -0.23 -14.31 14 18 H 0.29 7.78 8.31 -40.82 -0.34 7.44 14 19 H 0.10 1.23 8.14 -51.93 -0.42 0.81 14 20 H 0.10 1.26 8.14 -51.93 -0.42 0.83 14 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 14 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 14 23 H 0.43 4.76 8.96 -40.82 -0.37 4.39 14 LS Contribution 226.23 15.07 3.41 3.41 Total: -1.00 -38.86 226.23 -6.57 -45.43 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -1.60 Total: 0.15 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.60 Total: -8.10 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.10 Total: -55.96 kcal Atomic # 8 Polarization: -72.76 SS G_CDS: -2.31 Total: -75.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 74.92 SS G_CDS: -0.55 Total: 74.37 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -38.86 -6.57 -45.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059846351.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.369 kcal (2) G-P(sol) polarization free energy of solvation -38.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds