Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48500 * 109.47648 * 240.00221 * 3 2 1 5 5 H 1.48506 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47388 * 119.99607 * 3 2 1 7 7 C 1.37881 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00152 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99820 * 0.02562 * 7 2 1 10 10 O 1.42106 * 106.40190 * 66.45843 * 9 7 2 11 11 O 1.42096 * 106.40148 * 293.53678 * 9 7 2 12 12 N 1.65594 * 107.21675 * 179.97438 * 9 7 2 13 13 C 1.47057 * 125.40881 * 90.00176 * 12 9 7 14 14 C 1.54105 * 103.99235 * 179.97438 * 13 12 9 15 15 N 1.47394 * 103.70056 * 0.10684 * 14 13 12 16 16 C 1.33947 * 109.21036 * 359.88525 * 15 14 13 17 17 O 1.21594 * 123.03846 * 180.09410 * 16 15 14 18 18 H 0.97001 * 119.99991 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.54831 * 298.59334 * 13 12 9 20 20 H 1.08997 * 110.54826 * 61.25808 * 13 12 9 21 21 H 1.08996 * 110.55034 * 118.66113 * 14 13 12 22 22 H 1.09001 * 110.54910 * 241.47819 * 14 13 12 23 23 H 0.97000 * 125.37712 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2484 -3.9353 0.0005 13 6 2.8271 -4.5607 1.1991 14 6 3.8011 -5.6141 0.6364 15 7 3.6684 -5.4672 -0.8242 16 6 2.7763 -4.5044 -1.0911 17 8 2.4729 -4.1767 -2.2221 18 1 -0.4850 0.8401 -0.0004 19 1 3.3649 -3.8225 1.7940 20 1 2.0492 -5.0377 1.7953 21 1 4.8218 -5.3987 0.9522 22 1 3.5054 -6.6150 0.9506 23 1 4.1500 -5.9866 -1.4869 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059846351.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = -139.310075 kcal Electronic energy + Delta-G solvation = -13635.293081 eV Core-core repulsion = 10995.280701 eV Total energy + Delta-G solvation = -2640.012380 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01931 -37.98947 -37.21967 -36.33727 -35.29951 -34.33961 -29.82534 -28.37570 -24.06535 -23.71258 -20.84457 -19.59089 -18.78934 -17.94918 -17.65109 -17.01009 -16.45080 -15.86073 -15.70605 -15.17199 -14.84382 -14.07266 -13.61165 -13.47917 -13.29251 -13.03307 -12.82453 -12.64670 -12.53443 -12.32824 -11.55503 -11.28788 -11.27151 -10.83999 -10.00789 -8.83650 -7.59587 -0.13950 1.31463 1.36105 1.49260 1.77476 2.09955 2.27969 2.51399 2.93165 3.50787 3.58057 3.73047 4.17427 4.33640 4.63453 4.73489 4.95643 5.00597 5.18895 5.76741 6.01498 6.14318 6.67782 7.28059 8.14484 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.011648 C = 0.011332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.066398 B = 2403.299416 C = 2470.258235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.240 1.240 7 C -1.035 5.035 8 H 0.120 0.880 9 S 2.715 3.285 10 O -1.017 7.017 11 O -1.009 7.009 12 N -0.961 5.961 13 C 0.066 3.934 14 C 0.103 3.897 15 N -0.715 5.715 16 C 0.697 3.303 17 O -0.604 6.604 18 H 0.303 0.697 19 H 0.113 0.887 20 H 0.107 0.893 21 H 0.127 0.873 22 H 0.124 0.876 23 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 -8.219 5.605 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.144 4.144 3 Si 0.816 3.184 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.163 1.163 7 C -1.169 5.169 8 H 0.138 0.862 9 S 2.818 3.182 10 O -1.007 7.007 11 O -0.999 6.999 12 N -0.805 5.805 13 C -0.056 4.056 14 C -0.021 4.021 15 N -0.379 5.379 16 C 0.396 3.604 17 O -0.481 6.481 18 H 0.113 0.887 19 H 0.131 0.869 20 H 0.126 0.874 21 H 0.145 0.855 22 H 0.142 0.858 23 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.980 -8.091 5.062 13.809 hybrid contribution 0.509 0.827 -0.433 1.063 sum 10.488 -7.265 4.628 13.572 Atomic orbital electron populations 1.69965 1.08789 1.32856 1.40538 1.26123 0.95567 1.05491 0.87262 0.85052 0.78749 0.73776 0.80865 1.18139 1.18260 1.16277 1.30653 1.07039 1.11465 1.67730 0.86153 1.00490 0.72245 0.73555 0.71917 1.93379 1.73373 1.87411 1.46580 1.93341 1.72718 1.87844 1.46046 1.57202 1.57317 1.51289 1.14733 1.23015 0.98583 0.97527 0.86510 1.22840 1.01436 1.00299 0.77513 1.45307 1.43722 1.38254 1.10606 1.16180 0.80103 0.80736 0.83395 1.91059 1.66508 1.68264 1.22306 0.88667 0.86889 0.87449 0.85543 0.85771 0.71329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.85 13.19 21.45 0.28 -53.57 14 2 C 0.07 3.91 5.46 84.66 0.46 4.38 14 3 Si 1.00 41.61 29.54 68.60 2.03 43.63 14 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 14 5 H -0.26 -9.99 7.11 99.48 0.71 -9.29 14 6 H -0.24 -9.01 7.11 99.48 0.71 -8.31 14 7 C -1.03 -58.98 9.75 67.74 0.66 -58.32 14 8 H 0.12 6.18 7.81 -2.91 -0.02 6.15 14 9 S 2.72 154.35 5.11 -56.49 -0.29 154.06 14 10 O -1.02 -67.55 16.46 -120.24 -1.98 -69.53 14 11 O -1.01 -59.17 17.59 -128.00 -2.25 -61.43 14 12 N -0.96 -41.01 3.34 -477.32 -1.60 -42.61 14 13 C 0.07 1.77 7.32 86.65 0.63 2.41 14 14 C 0.10 1.66 8.08 86.58 0.70 2.36 14 15 N -0.71 -18.26 6.39 -476.58 -3.04 -21.30 14 16 C 0.70 29.23 8.55 179.57 1.53 30.77 14 17 O -0.60 -32.28 16.49 14.36 0.24 -32.04 14 18 H 0.30 16.32 8.31 -92.71 -0.77 15.55 14 19 H 0.11 2.59 8.14 -2.39 -0.02 2.57 14 20 H 0.11 2.58 8.14 -2.39 -0.02 2.56 14 21 H 0.13 1.11 8.14 -2.39 -0.02 1.09 14 22 H 0.12 1.11 8.14 -2.39 -0.02 1.09 14 23 H 0.44 8.49 8.96 -92.71 -0.83 7.66 14 Total: -1.00 -89.61 226.23 -2.20 -91.81 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.42 Total: 9.38 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 3.99 Total: -18.42 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -4.36 Total: -117.47 kcal Atomic # 8 Polarization: -159.00 SS G_CDS: -3.99 Total: -163.00 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 154.35 SS G_CDS: -0.29 Total: 154.06 kcal Total: -89.61 -2.20 -91.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059846351.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.499 kcal (2) G-P(sol) polarization free energy of solvation -89.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds