Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 N 1.46499 * 109.47064 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00069 * 180.02562 * 6 5 4 8 8 H 1.08006 * 120.00068 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00437 * 180.02562 * 7 6 5 10 10 N 1.31621 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00440 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46947 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47463 * 119.99513 * 11 9 7 14 14 H 1.48500 * 109.46899 * 239.99560 * 11 9 7 15 15 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 16 16 C 1.38237 * 119.99936 * 299.72798 * 15 2 1 17 17 C 1.38239 * 120.00019 * 179.79019 * 16 15 2 18 18 C 1.38233 * 119.99539 * 0.43796 * 17 16 15 19 19 C 1.38231 * 120.00493 * 359.81540 * 18 17 16 20 20 C 1.38236 * 119.99974 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 25 25 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 26 26 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 27 27 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 28 28 H 0.97005 * 120.00389 * 359.97438 * 6 5 4 29 29 H 0.97001 * 120.00326 * 180.02562 * 10 9 7 30 30 H 1.07998 * 120.00490 * 359.97438 * 16 15 2 31 31 H 1.08000 * 120.00241 * 180.27418 * 17 16 15 32 32 H 1.08006 * 119.99896 * 179.83904 * 18 17 16 33 33 H 1.08002 * 120.00573 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.00273 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 7 2.1242 -0.6213 3.6914 7 6 1.8795 -0.0970 4.9326 8 1 1.3265 0.8256 5.0296 9 6 2.3432 -0.7507 6.0659 10 7 3.0175 -1.8749 5.9477 11 14 2.0101 -0.0352 7.7590 12 1 1.2382 1.2259 7.6202 13 1 1.2283 -1.0086 8.5628 14 1 3.2995 0.2465 8.4397 15 6 2.0323 -0.7105 -1.2304 16 6 1.7030 -2.0356 -1.4463 17 6 2.1601 -2.6860 -2.5772 18 6 2.9541 -2.0140 -3.4876 19 6 3.2878 -0.6905 -3.2691 20 6 2.8270 -0.0387 -2.1405 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -1.7198 1.2952 25 1 3.1264 -0.7995 1.2056 26 1 2.0700 1.0675 2.4493 27 1 0.5490 0.1472 2.5389 28 1 2.6205 -1.4502 3.6043 29 1 3.3412 -2.3319 6.7397 30 1 1.0861 -2.5618 -0.7330 31 1 1.8991 -3.7200 -2.7481 32 1 3.3134 -2.5229 -4.3698 33 1 3.9077 -0.1652 -3.9806 34 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061910596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = 15.540147 kcal Electronic energy + Delta-G solvation = -14044.672080 eV Core-core repulsion = 11748.855754 eV Total energy + Delta-G solvation = -2295.816327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45734 -36.21131 -33.94962 -31.27419 -30.86349 -29.44447 -27.43655 -24.44084 -23.02844 -22.52366 -21.13573 -19.61567 -16.98587 -16.80568 -15.36009 -15.08376 -14.55979 -14.18658 -13.80048 -13.57132 -13.31466 -12.91597 -12.85062 -12.53537 -12.09457 -11.54627 -11.30339 -11.05312 -10.98477 -10.82417 -10.56981 -10.31136 -10.22054 -9.91891 -9.65934 -8.87985 -8.82029 -8.60014 -6.86371 -5.72352 -3.00654 1.41908 1.44213 3.45881 3.51127 3.53702 3.83725 4.62060 4.79247 4.87199 5.01545 5.14495 5.24641 5.39825 5.52977 5.58932 5.60744 5.62119 5.89314 5.96921 6.04149 6.09438 6.14893 6.28553 6.31506 6.43804 6.47296 6.53052 6.57389 6.76206 6.93545 6.99595 7.06243 7.74130 8.46966 9.57684 10.17383 10.51825 11.50905 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.055171 B = 0.004924 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.390556 B = 5684.798970 C = 5858.078604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.152 3.848 6 N -0.735 5.735 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.065 4.065 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.120 4.120 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.383 0.617 29 H 0.254 0.746 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 1.447 -18.339 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 H 0.095 0.905 4 C -0.154 4.154 5 C 0.025 3.975 6 N -0.379 5.379 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.065 4.065 16 C -0.131 4.131 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.138 4.138 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.217 0.783 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.325 1.567 -18.204 18.419 hybrid contribution 0.114 0.011 0.924 0.931 sum -2.211 1.578 -17.279 17.492 Atomic orbital electron populations 1.21886 0.94352 1.02096 1.01727 1.20165 0.96025 0.99104 0.91756 0.90482 1.21779 1.00976 0.99435 0.93225 1.20711 0.96483 0.94402 0.85941 1.42398 1.66634 1.28053 1.00800 1.19301 1.28675 1.05079 0.83794 0.91159 1.24746 1.01058 0.97525 0.97844 1.69677 1.42479 1.18005 1.28206 0.86115 0.77346 0.78074 0.84684 1.20554 1.21878 1.21884 1.20016 0.96491 0.94217 0.95795 1.21078 1.00198 0.94426 0.97396 1.21138 0.98232 0.99747 0.94708 1.21083 0.99392 0.94973 0.99587 1.21099 1.00207 0.95006 0.97665 1.21105 0.98266 0.99976 0.94503 0.91505 0.93194 0.92592 0.91855 0.91971 0.96592 0.96081 0.78349 0.93605 0.85942 0.86328 0.86538 0.86425 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.76 37.16 0.33 -1.51 16 2 C -0.05 -0.71 2.56 -91.77 -0.24 -0.95 16 3 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 4 C -0.12 -1.98 4.53 -26.73 -0.12 -2.10 16 5 C 0.15 3.17 6.02 -4.04 -0.02 3.14 16 6 N -0.73 -19.44 5.60 -59.91 -0.34 -19.78 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 15 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 16 C -0.11 -1.45 8.76 -39.58 -0.35 -1.79 16 17 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 18 C -0.13 -1.43 10.05 -39.59 -0.40 -1.82 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.46 9.67 -39.58 -0.38 -1.85 16 21 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.70 7.41 -51.93 -0.38 0.32 16 24 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.02 0.44 6.56 -51.93 -0.34 0.10 16 28 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 30 H 0.12 1.51 7.16 -52.49 -0.38 1.14 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.28 7.95 -52.49 -0.42 0.86 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -31.48 283.74 -8.14 -39.62 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.06 Total: 5.69 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.72 Total: -19.33 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.39 Total: -48.06 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.48 -8.14 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.162 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds