Wall clock time and date at job start Mon Mar 30 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46497 * 109.46795 * 179.97438 * 5 4 2 7 7 C 1.36940 * 119.99811 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00195 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00112 * 179.97438 * 7 6 5 10 10 N 1.31615 * 119.99994 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00077 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46967 * 60.00291 * 11 9 7 13 13 H 1.48498 * 109.46842 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47240 * 300.00296 * 11 9 7 15 15 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 16 16 C 1.38237 * 119.99747 * 59.72563 * 15 2 1 17 17 C 1.38240 * 119.99788 * 179.81066 * 16 15 2 18 18 C 1.38236 * 119.99657 * 0.39831 * 17 16 15 19 19 C 1.38230 * 120.00403 * 359.85459 * 18 17 16 20 20 C 1.38232 * 120.00112 * 240.00114 * 15 2 1 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 25 25 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 26 26 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 27 27 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 28 28 H 0.96995 * 120.00714 * 0.02562 * 6 5 4 29 29 H 0.96998 * 120.00304 * 180.02562 * 10 9 7 30 30 H 1.08003 * 120.00234 * 0.02562 * 16 15 2 31 31 H 1.07995 * 119.99993 * 180.23158 * 17 16 15 32 32 H 1.08005 * 119.99783 * 179.83592 * 18 17 16 33 33 H 1.08000 * 120.00473 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.99991 * 359.97438 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1242 -0.6214 -3.6914 7 6 1.8797 -0.0971 -4.9326 8 1 1.3268 0.8255 -5.0297 9 6 2.3433 -0.7510 -6.0659 10 7 3.0176 -1.8751 -5.9476 11 14 2.0103 -0.0354 -7.7590 12 1 2.6157 1.3174 -7.8524 13 1 2.6057 -0.9172 -8.7949 14 1 0.5445 0.0622 -7.9756 15 6 2.0323 -0.7104 1.2305 16 6 1.6936 -2.0322 1.4521 17 6 2.1576 -2.6850 2.5788 18 6 2.9535 -2.0136 3.4881 19 6 3.2878 -0.6903 3.2691 20 6 2.8270 -0.0386 2.1405 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.1264 -0.7995 -1.2055 25 1 1.6055 -1.7198 -1.2951 26 1 0.5490 0.1471 -2.5390 27 1 2.0700 1.0675 -2.4494 28 1 2.6205 -1.4503 -3.6043 29 1 3.3420 -2.3318 -6.7395 30 1 1.0694 -2.5559 0.7432 31 1 1.8961 -3.7187 2.7501 32 1 3.3138 -2.5228 4.3697 33 1 3.9092 -0.1656 3.9797 34 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061910597.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:01 Heat of formation + Delta-G solvation = -2.020842 kcal Electronic energy + Delta-G solvation = -14044.957231 eV Core-core repulsion = 11748.379403 eV Total energy + Delta-G solvation = -2296.577828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40236 -37.62488 -35.69344 -33.15454 -31.74196 -30.68323 -28.92173 -26.08024 -24.50526 -23.54525 -22.53748 -20.79069 -19.09066 -17.74414 -16.72387 -16.35257 -16.00861 -15.47318 -15.31610 -15.21976 -14.40622 -14.26529 -14.08165 -13.81455 -13.19395 -12.96982 -12.86640 -12.59305 -12.48308 -12.15005 -12.10133 -11.97113 -11.74893 -11.47985 -11.33016 -10.89966 -9.76361 -9.53736 -9.00974 -7.95799 -5.25586 0.51518 0.55587 1.46749 1.50689 1.56909 2.55929 2.93617 3.37510 3.70962 3.84811 4.03045 4.20588 4.22652 4.33145 4.40538 4.51456 4.61856 4.63846 4.70134 4.79036 4.84076 5.06385 5.09444 5.20491 5.23259 5.25958 5.38798 5.45423 5.48474 5.65048 5.67595 5.83228 6.18839 6.26508 7.31917 8.08313 8.31700 9.27977 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.055176 B = 0.004923 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.346765 B = 5686.241764 C = 5858.825934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 H 0.082 0.918 4 C -0.102 4.102 5 C 0.151 3.849 6 N -0.750 5.750 7 C -0.251 4.251 8 H 0.076 0.924 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.977 3.023 12 H -0.277 1.277 13 H -0.294 1.294 14 H -0.276 1.276 15 C -0.082 4.082 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.132 4.132 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.018 0.982 28 H 0.372 0.628 29 H 0.252 0.748 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 2.127 19.447 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 H 0.101 0.899 4 C -0.140 4.140 5 C 0.025 3.975 6 N -0.393 5.393 7 C -0.382 4.382 8 H 0.094 0.906 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.805 3.195 12 H -0.203 1.203 13 H -0.220 1.220 14 H -0.202 1.202 15 C -0.082 4.082 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.150 4.150 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.204 0.796 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.553 2.264 19.335 19.634 hybrid contribution 0.181 -0.192 -1.173 1.203 sum -2.373 2.072 18.162 18.433 Atomic orbital electron populations 1.21851 0.93570 1.02194 1.02107 1.20049 0.96636 0.98933 0.90531 0.89929 1.21614 1.00129 0.99002 0.93221 1.20884 0.96551 0.94464 0.85619 1.42635 1.66766 1.27997 1.01871 1.19648 1.28302 1.05226 0.85048 0.90592 1.25630 1.01326 0.98076 1.01830 1.69822 1.43757 1.19459 1.29216 0.85159 0.77888 0.77345 0.79059 1.20257 1.21973 1.20194 1.19983 0.97711 0.94625 0.95914 1.21192 1.00807 0.94627 0.98210 1.21423 0.98086 1.00707 0.94388 1.21457 0.98551 0.95058 1.00087 1.21445 0.99945 0.95302 0.97602 1.21333 0.98156 1.00699 0.94794 0.92310 0.92676 0.91526 0.93212 0.92443 0.95426 0.96433 0.79642 0.93920 0.86362 0.84557 0.83953 0.83968 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.76 71.98 0.63 -2.82 16 2 C -0.04 -1.15 2.56 -11.54 -0.03 -1.18 16 3 H 0.08 2.12 7.88 -2.39 -0.02 2.10 16 4 C -0.10 -3.49 4.54 30.60 0.14 -3.36 16 5 C 0.15 6.31 6.02 86.38 0.52 6.83 16 6 N -0.75 -40.26 5.60 -343.44 -1.92 -42.19 16 7 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 10 N -0.97 -61.16 13.06 21.65 0.28 -60.87 16 11 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 C -0.08 -2.10 4.78 -19.87 -0.09 -2.19 16 16 C -0.13 -3.24 8.76 22.27 0.20 -3.05 16 17 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 18 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 19 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 20 C -0.13 -2.99 9.67 22.27 0.22 -2.77 16 21 H 0.06 1.52 6.57 -2.39 -0.02 1.50 16 22 H 0.05 1.35 7.38 -2.39 -0.02 1.33 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 26 H 0.03 1.14 6.57 -2.39 -0.02 1.12 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.37 21.22 7.67 -92.71 -0.71 20.51 16 29 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.12 2.93 7.16 -2.91 -0.02 2.91 16 31 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.13 2.56 7.95 -2.91 -0.02 2.54 16 Total: -1.00 -66.37 283.74 4.30 -62.08 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.36 Total: 25.36 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.55 Total: -33.33 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -1.64 Total: -103.06 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -66.37 4.30 -62.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061910597.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.058 kcal (2) G-P(sol) polarization free energy of solvation -66.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds