Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00023 * 2 1 4 4 H 1.48502 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47321 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.47579 * 59.99976 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00329 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47220 * 180.02562 * 9 7 2 11 11 C 1.34957 * 126.03329 * 125.02441 * 10 9 7 12 12 C 1.35317 * 107.74055 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.03591 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47049 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.47616 * 299.97983 * 13 12 11 16 16 F 1.39905 * 109.46969 * 59.97644 * 13 12 11 17 17 C 1.39868 * 107.92640 * 0.02562 * 12 11 10 18 18 N 1.30844 * 108.19764 * 359.97438 * 17 12 11 19 19 H 0.96997 * 120.00092 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47128 * 60.00073 * 9 7 2 21 21 H 1.09005 * 109.47372 * 300.00568 * 9 7 2 22 22 H 1.07995 * 126.12756 * 0.02562 * 11 10 9 23 23 H 1.07995 * 125.89923 * 180.25722 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2428 -4.6231 0.8932 12 6 3.2626 -5.4416 0.5451 13 6 3.6743 -6.7003 1.2643 14 9 4.7684 -7.2752 0.6089 15 9 4.0299 -6.3899 2.5812 16 9 2.6066 -7.6044 1.2703 17 6 3.8670 -4.9130 -0.6002 18 7 3.2325 -3.8168 -0.9282 19 1 -0.4850 0.8400 -0.0004 20 1 0.6240 -2.5568 -0.8903 21 1 0.6246 -2.5572 0.8897 22 1 1.5791 -4.7553 1.7348 23 1 4.7089 -5.3389 -1.1258 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070018899.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = -85.044849 kcal Electronic energy + Delta-G solvation = -14478.004576 eV Core-core repulsion = 11298.877716 eV Total energy + Delta-G solvation = -3179.126860 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.76077 -47.30622 -47.24909 -40.72928 -33.92612 -31.90177 -30.53958 -27.72910 -24.95214 -23.37321 -20.59057 -20.48082 -18.12696 -17.89908 -17.70684 -16.64213 -15.53346 -14.65373 -14.46384 -14.17347 -14.07057 -13.72903 -13.53406 -13.44711 -13.42813 -12.63174 -12.37450 -12.25459 -11.75269 -11.09352 -10.95087 -10.42034 -10.22782 -9.84150 -8.96626 -8.76578 -8.31739 -6.37496 -4.43463 2.28828 2.89975 2.95571 3.16207 3.24221 3.29667 3.39296 4.21676 4.31083 4.42728 4.84628 4.99055 5.15441 5.37779 5.81990 6.02686 6.58421 6.81298 6.97553 7.47521 7.68149 7.69248 8.20227 8.64092 9.23406 10.71856 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.057192 B = 0.006588 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.463552 B = 4249.203327 C = 4338.853916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.251 3.749 10 N -0.313 5.313 11 C 0.112 3.888 12 C -0.367 4.367 13 C 0.548 3.452 14 F -0.183 7.183 15 F -0.185 7.185 16 F -0.186 7.186 17 C 0.064 3.936 18 N -0.271 5.271 19 H 0.269 0.731 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.177 0.823 23 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 -10.243 2.545 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.134 3.866 10 N -0.089 5.089 11 C -0.042 4.042 12 C -0.382 4.382 13 C 0.493 3.507 14 F -0.165 7.165 15 F -0.167 7.167 16 F -0.168 7.168 17 C -0.122 4.122 18 N -0.092 5.092 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.194 0.806 23 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.063 -8.981 1.693 10.002 hybrid contribution 0.432 0.005 0.762 0.876 sum 4.495 -8.976 2.456 10.334 Atomic orbital electron populations 1.69917 1.06096 1.27835 1.49202 1.24949 0.95027 0.99709 0.94269 0.86221 0.80055 0.82119 0.77845 1.19448 1.20543 1.20648 1.21234 0.94092 0.89073 1.52874 0.91039 1.19957 0.85658 0.81109 0.99880 1.49727 1.23192 1.18644 1.17354 1.22218 0.97588 0.88787 0.95636 1.19911 1.08836 1.02591 1.06841 1.17363 0.74018 0.83059 0.76253 1.93121 1.55807 1.86325 1.81206 1.93177 1.92098 1.93065 1.38333 1.93171 1.56811 1.70370 1.96434 1.23567 1.00118 0.93542 0.94965 1.77551 1.00836 1.16717 1.14065 0.92164 0.92961 0.92241 0.80554 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 13.29 55.43 0.74 -23.71 14 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 14 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 14 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 14 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 14 7 C -0.53 -14.28 9.24 -34.44 -0.32 -14.59 14 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 14 9 C 0.25 6.00 6.26 -5.20 -0.03 5.97 14 10 N -0.31 -6.73 3.67 -62.55 -0.23 -6.96 14 11 C 0.11 2.01 11.36 -17.22 -0.20 1.82 14 12 C -0.37 -6.24 5.52 -105.05 -0.58 -6.82 14 13 C 0.55 8.24 3.49 36.01 0.13 8.36 14 14 F -0.18 -2.64 16.82 2.25 0.04 -2.60 14 15 F -0.19 -2.81 17.30 2.25 0.04 -2.78 14 16 F -0.19 -2.76 17.30 2.25 0.04 -2.72 14 17 C 0.06 1.14 11.45 -17.36 -0.20 0.94 14 18 N -0.27 -5.82 12.41 30.62 0.38 -5.44 14 19 H 0.27 6.93 8.31 -40.82 -0.34 6.59 14 20 H 0.05 1.32 8.14 -51.93 -0.42 0.90 14 21 H 0.06 1.39 8.07 -51.93 -0.42 0.97 14 22 H 0.18 2.56 8.06 -52.49 -0.42 2.14 14 23 H 0.18 2.56 8.00 -52.49 -0.42 2.14 14 LS Contribution 232.81 15.07 3.51 3.51 Total: -1.00 -27.88 232.81 -3.04 -30.92 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -1.23 Total: -3.25 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.30 Total: -2.72 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.89 Total: -36.10 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.12 Total: -8.09 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -27.88 -3.04 -30.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070018899.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.127 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds