Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86807 * 120.00092 * 2 1 4 4 H 1.48495 * 109.47103 * 271.15779 * 3 2 1 5 5 H 1.48500 * 109.46989 * 31.15767 * 3 2 1 6 6 H 1.48504 * 109.46896 * 151.15466 * 3 2 1 7 7 C 1.40165 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00082 * 344.20206 * 7 2 1 9 9 C 1.40241 * 120.00162 * 164.20683 * 7 2 1 10 10 C 1.39807 * 126.65692 * 341.25380 * 9 7 2 11 11 C 1.38704 * 107.53382 * 179.97438 * 10 9 7 12 12 N 1.31237 * 109.07661 * 0.27055 * 11 10 9 13 13 N 1.37461 * 126.66261 * 161.23439 * 9 7 2 14 14 C 1.46497 * 126.20140 * 0.02562 * 13 9 7 15 15 C 1.52999 * 109.47286 * 90.00217 * 14 13 9 16 16 F 1.39895 * 109.47206 * 59.99611 * 15 14 13 17 17 F 1.39900 * 109.47302 * 179.97438 * 15 14 13 18 18 F 1.39908 * 109.46936 * 299.99912 * 15 14 13 19 19 H 0.97001 * 120.00100 * 359.97438 * 1 2 3 20 20 H 1.08001 * 126.23603 * 359.96596 * 10 9 7 21 21 H 1.08001 * 125.45864 * 180.02562 * 11 10 9 22 22 H 1.09003 * 109.47125 * 210.00195 * 14 13 9 23 23 H 1.09001 * 109.47143 * 330.00084 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4646 2.0606 -1.3997 5 1 1.4516 2.6455 0.7244 6 1 3.5512 1.4332 0.6755 7 6 2.0084 -1.2139 -0.0005 8 1 1.4990 -2.1316 0.2537 9 6 3.3711 -1.2367 -0.3311 10 6 4.0799 -0.2471 -1.0188 11 6 5.3948 -0.6746 -1.1282 12 7 5.5123 -1.8509 -0.5583 13 7 4.2693 -2.2362 -0.0416 14 6 3.9775 -3.4814 0.6729 15 6 3.5621 -4.5596 -0.3300 16 9 4.6029 -4.7765 -1.2393 17 9 3.2840 -5.7489 0.3522 18 9 2.4200 -4.1393 -1.0202 19 1 -0.4850 0.8400 0.0004 20 1 3.6769 0.6812 -1.3962 21 1 6.1931 -0.1288 -1.6092 22 1 4.8674 -3.8089 1.2106 23 1 3.1666 -3.3124 1.3813 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072338273.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -90.409839 kcal Electronic energy + Delta-G solvation = -15230.636548 eV Core-core repulsion = 12051.277044 eV Total energy + Delta-G solvation = -3179.359503 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.57696 -47.15249 -46.98965 -39.34998 -33.76102 -32.90262 -29.99565 -27.53997 -25.06414 -23.07062 -20.42924 -19.56031 -18.06497 -17.93233 -17.34102 -16.65578 -15.80467 -14.27566 -14.16624 -13.93664 -13.68862 -13.48762 -13.29191 -13.17587 -13.13425 -12.97011 -12.43642 -11.90168 -11.63364 -11.36108 -11.05131 -10.41107 -9.87179 -9.44713 -9.15542 -8.24919 -7.39174 -7.08704 -4.75104 2.73006 3.10017 3.16645 3.28983 3.39909 3.53962 3.95619 4.03948 4.31029 4.47791 4.78499 5.03823 5.35138 5.58056 6.03092 6.61811 6.75551 7.02966 7.24819 7.61360 8.02891 8.10292 8.38130 8.69744 9.13984 9.91822 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.036332 B = 0.012199 C = 0.009831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.489177 B = 2294.770013 C = 2847.379982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.099 3.901 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.241 1.241 7 C -0.440 4.440 8 H 0.095 0.905 9 C 0.262 3.738 10 C -0.429 4.429 11 C 0.081 3.919 12 N -0.379 5.379 13 N -0.431 5.431 14 C 0.122 3.878 15 C 0.427 3.573 16 F -0.180 7.180 17 F -0.192 7.192 18 F -0.171 7.171 19 H 0.290 0.710 20 H 0.121 0.879 21 H 0.156 0.844 22 H 0.118 0.882 23 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -3.190 1.711 5.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.125 4.125 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.225 1.225 6 H -0.164 1.164 7 C -0.475 4.475 8 H 0.113 0.887 9 C 0.146 3.854 10 C -0.460 4.460 11 C -0.101 4.101 12 N -0.199 5.199 13 N -0.219 5.219 14 C -0.005 4.005 15 C 0.371 3.629 16 F -0.162 7.162 17 F -0.173 7.173 18 F -0.153 7.153 19 H 0.101 0.899 20 H 0.139 0.861 21 H 0.173 0.827 22 H 0.136 0.864 23 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.150 -4.165 2.018 6.216 hybrid contribution -0.542 1.110 -0.530 1.344 sum 3.608 -3.054 1.489 4.956 Atomic orbital electron populations 1.69587 1.08117 1.30856 1.33404 1.25980 0.94746 1.01730 0.89994 0.86106 0.80539 0.78522 0.79403 1.19424 1.22497 1.16398 1.18554 0.90144 0.96724 1.42074 0.88744 1.18805 0.90160 0.85790 0.90684 1.21020 0.95221 1.05458 1.24277 1.22964 0.96585 0.93351 0.97242 1.77047 1.01252 1.16636 1.24951 1.48105 1.07160 1.15176 1.51463 1.22149 1.04974 0.81591 0.91777 1.21632 0.75525 0.82662 0.83115 1.93179 1.58227 1.95232 1.69551 1.93138 1.93979 1.50427 1.79804 1.93256 1.51280 1.89636 1.81090 0.89886 0.86143 0.82680 0.86427 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.20 13.92 55.56 0.77 -19.43 14 2 C 0.10 2.48 5.51 -17.29 -0.10 2.39 14 3 Si 0.93 20.38 24.52 -169.99 -4.17 16.21 14 4 H -0.27 -5.82 6.68 56.52 0.38 -5.44 14 5 H -0.30 -6.25 7.11 56.52 0.40 -5.85 14 6 H -0.24 -5.46 6.56 56.52 0.37 -5.09 14 7 C -0.44 -11.38 9.22 -38.11 -0.35 -11.73 14 8 H 0.09 2.50 7.34 -52.49 -0.39 2.11 14 9 C 0.26 6.62 6.15 -84.00 -0.52 6.10 14 10 C -0.43 -10.54 8.13 -38.82 -0.32 -10.85 14 11 C 0.08 1.85 11.93 -17.63 -0.21 1.64 14 12 N -0.38 -8.93 12.54 30.45 0.38 -8.54 14 13 N -0.43 -9.99 3.54 -58.62 -0.21 -10.19 14 14 C 0.12 2.26 6.21 -4.04 -0.03 2.23 14 15 C 0.43 8.00 3.29 37.16 0.12 8.12 14 16 F -0.18 -3.61 17.23 2.25 0.04 -3.57 14 17 F -0.19 -3.17 17.32 2.25 0.04 -3.13 14 18 F -0.17 -3.68 16.42 2.25 0.04 -3.64 14 19 H 0.29 6.65 8.29 -40.82 -0.34 6.31 14 20 H 0.12 2.88 4.21 -52.49 -0.22 2.66 14 21 H 0.16 2.88 8.06 -52.49 -0.42 2.45 14 22 H 0.12 1.82 8.14 -51.93 -0.42 1.40 14 23 H 0.12 2.10 7.69 -51.93 -0.40 1.70 14 LS Contribution 220.02 15.07 3.32 3.32 Total: -1.00 -28.60 220.02 -2.22 -30.82 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -1.04 Total: 0.26 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.39 Total: -2.10 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.95 Total: -38.17 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 0.11 Total: -10.34 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.17 Total: 16.21 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.60 -2.22 -30.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072338273.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.587 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds