Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35184 * 126.04732 * 2 1 4 4 O 1.34604 * 107.29981 * 179.71437 * 3 2 1 5 5 C 1.34692 * 107.64003 * 0.42155 * 4 3 2 6 6 C 1.46404 * 125.75759 * 179.83693 * 5 4 3 7 7 N 1.32261 * 125.30308 * 179.71643 * 6 5 4 8 8 C 1.32418 * 109.26370 * 179.97438 * 7 6 5 9 9 C 1.40088 * 107.35224 * 0.22592 * 8 7 6 10 10 C 1.39311 * 126.78639 * 179.77022 * 9 8 7 11 11 H 1.08001 * 119.99510 * 0.02562 * 10 9 8 12 12 C 1.40318 * 120.00167 * 179.97438 * 10 9 8 13 13 N 1.30698 * 119.99702 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00254 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46769 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47007 * 119.99815 * 14 12 10 17 17 H 1.48492 * 109.47194 * 240.00073 * 14 12 10 18 18 O 1.34756 * 125.30145 * 359.67408 * 6 5 4 19 19 N 1.31840 * 108.48350 * 359.57063 * 5 4 3 20 20 H 1.09003 * 109.47253 * 270.00076 * 1 2 3 21 21 H 1.09004 * 109.46918 * 30.00010 * 1 2 3 22 22 H 1.08997 * 109.47388 * 150.00366 * 1 2 3 23 23 H 1.08000 * 126.35062 * 359.97438 * 3 2 1 24 24 H 1.08002 * 126.32002 * 179.97438 * 8 7 6 25 25 H 0.97002 * 119.99604 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3025 1.0930 0.0000 4 8 3.5771 0.6604 0.0064 5 6 3.5511 -0.6863 0.0008 6 6 4.7224 -1.5646 0.0014 7 7 4.6864 -2.8867 0.0012 8 6 5.9241 -3.3574 0.0013 9 6 6.7899 -2.2562 0.0068 10 6 8.1826 -2.2900 0.0133 11 1 8.6997 -3.2382 0.0140 12 6 8.9135 -1.0922 0.0178 13 7 8.2877 0.0552 0.0154 14 14 10.7809 -1.1375 0.0258 15 1 11.2418 -2.5493 0.0268 16 1 11.2979 -0.4484 -1.1838 17 1 11.2876 -0.4511 1.2412 18 8 6.0052 -1.1518 0.0014 19 7 2.2929 -1.0800 0.0005 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8900 -0.5138 23 1 1.9759 2.1224 -0.0004 24 1 6.2126 -4.3982 0.0016 25 1 8.7929 0.8832 0.0189 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074276572.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -1.502880 kcal Electronic energy + Delta-G solvation = -14025.473117 eV Core-core repulsion = 11391.825649 eV Total energy + Delta-G solvation = -2633.647468 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.18242 -43.00561 -36.25191 -36.07883 -34.92066 -33.00326 -31.35687 -28.74761 -27.10580 -24.55041 -23.01862 -21.95315 -21.74899 -19.70009 -18.63895 -17.81276 -17.34518 -16.82696 -16.56292 -15.54771 -15.40683 -14.97282 -14.12476 -14.07830 -13.85627 -13.32419 -13.14879 -12.97505 -12.96116 -12.22320 -12.00552 -11.87037 -11.52206 -11.50138 -11.11181 -10.31919 -9.23363 -9.05485 -6.78048 -0.00388 0.98659 1.37102 1.44604 1.60021 1.60506 1.78260 2.08002 2.27890 2.35318 2.93946 3.53172 3.93614 3.94595 4.46947 4.58463 4.77586 4.82026 4.84922 4.89380 4.94302 5.05267 5.36498 5.48757 5.82543 5.94275 6.21005 6.31726 6.76666 7.37567 7.94466 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.057809 B = 0.007101 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.236538 B = 3942.123685 C = 4411.209200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.029 4.029 3 C -0.095 4.095 4 O -0.215 6.215 5 C 0.292 3.708 6 C 0.002 3.998 7 N -0.397 5.397 8 C -0.206 4.206 9 C 0.153 3.847 10 C -0.410 4.410 11 H 0.147 0.853 12 C 0.012 3.988 13 N -0.786 5.786 14 Si 1.021 2.979 15 H -0.235 1.235 16 H -0.261 1.261 17 H -0.261 1.261 18 O -0.205 6.205 19 N -0.496 5.496 20 H 0.087 0.913 21 H 0.109 0.891 22 H 0.068 0.932 23 H 0.266 0.734 24 H 0.193 0.807 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 4.313 0.003 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.151 4.151 3 C -0.165 4.165 4 O -0.101 6.101 5 C 0.092 3.908 6 C -0.186 4.186 7 N -0.127 5.127 8 C -0.362 4.362 9 C 0.096 3.904 10 C -0.437 4.437 11 H 0.164 0.836 12 C -0.210 4.210 13 N -0.410 5.410 14 Si 0.838 3.162 15 H -0.157 1.157 16 H -0.186 1.186 17 H -0.186 1.186 18 O -0.095 6.095 19 N -0.230 5.230 20 H 0.106 0.894 21 H 0.128 0.872 22 H 0.087 0.913 23 H 0.282 0.718 24 H 0.210 0.790 25 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.340 3.789 0.003 5.051 hybrid contribution 1.374 1.174 0.016 1.807 sum -1.966 4.963 0.019 5.339 Atomic orbital electron populations 1.20235 0.82811 1.04599 1.04051 1.22757 1.00226 0.87320 1.04801 1.25928 0.78389 1.02727 1.09474 1.84572 1.32752 1.22523 1.70239 1.20967 0.90025 0.77745 1.02025 1.19933 0.81153 0.87569 1.29919 1.69418 1.26666 1.06723 1.09925 1.23650 0.86336 0.99884 1.26348 1.21512 0.93323 0.82854 0.92683 1.19751 0.86435 0.97440 1.40101 0.83586 1.27682 1.09303 0.93364 0.90645 1.69829 1.42599 1.00592 1.28004 0.84559 0.71002 0.81398 0.79285 1.15706 1.18568 1.18577 1.84867 1.15067 1.34482 1.75090 1.70567 0.98743 1.32217 1.21478 0.89392 0.87213 0.91262 0.71800 0.78987 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.37 10.43 71.23 0.74 -0.63 15 2 C -0.03 -1.03 7.10 41.59 0.30 -0.73 15 3 C -0.10 -3.20 12.10 67.12 0.81 -2.39 15 4 O -0.21 -10.07 10.81 -9.28 -0.10 -10.17 15 5 C 0.29 15.49 8.19 86.82 0.71 16.20 15 6 C 0.00 0.11 8.14 86.76 0.71 0.82 15 7 N -0.40 -22.86 11.25 -301.76 -3.40 -26.25 15 8 C -0.21 -10.93 11.97 85.05 1.02 -9.91 15 9 C 0.15 8.51 6.82 22.98 0.16 8.67 15 10 C -0.41 -20.06 9.33 23.03 0.21 -19.84 15 11 H 0.15 6.09 7.85 -2.91 -0.02 6.07 15 12 C 0.01 0.53 5.50 85.37 0.47 1.00 15 13 N -0.79 -39.90 12.04 21.90 0.26 -39.63 15 14 Si 1.02 32.47 29.56 68.60 2.03 34.49 15 15 H -0.23 -6.76 7.11 99.48 0.71 -6.05 15 16 H -0.26 -8.04 7.11 99.48 0.71 -7.34 15 17 H -0.26 -8.05 7.11 99.48 0.71 -7.34 15 18 O -0.20 -12.50 9.19 -19.00 -0.17 -12.67 15 19 N -0.50 -23.82 11.32 -293.42 -3.32 -27.15 15 20 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.27 5.24 8.06 -2.91 -0.02 5.22 15 24 H 0.19 8.59 8.06 -2.91 -0.02 8.56 15 25 H 0.31 13.56 8.29 -92.71 -0.77 12.79 15 Total: -1.00 -72.93 241.77 1.65 -71.28 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.22 Total: 16.90 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.13 Total: -6.81 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -6.46 Total: -93.03 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.27 Total: -22.84 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: 2.03 Total: 34.49 kcal Total: -72.93 1.65 -71.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276572.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.781 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds