Wall clock time and date at job start Mon Mar 30 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33682 * 126.38138 * 2 1 4 4 C 1.30594 * 109.10548 * 180.28475 * 3 2 1 5 5 O 1.33868 * 109.44884 * 359.75119 * 4 3 2 6 6 C 1.35362 * 107.73513 * 359.97438 * 5 4 3 7 7 C 1.46139 * 126.76653 * 179.97438 * 6 5 4 8 8 N 1.32348 * 125.32476 * 180.02562 * 7 6 5 9 9 C 1.32536 * 109.23407 * 179.75805 * 8 7 6 10 10 C 1.39948 * 107.37062 * 0.37992 * 9 8 7 11 11 C 1.39393 * 126.76751 * 179.88713 * 10 9 8 12 12 H 1.08002 * 120.00339 * 359.71775 * 11 10 9 13 13 C 1.40167 * 119.99813 * 179.43291 * 11 10 9 14 14 N 1.30814 * 119.99812 * 0.28142 * 13 11 10 15 15 Si 1.86803 * 119.99897 * 180.27990 * 13 11 10 16 16 H 1.48496 * 109.47141 * 59.99874 * 15 13 11 17 17 H 1.48490 * 109.47067 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 300.00151 * 15 13 11 19 19 O 1.34769 * 125.31615 * 0.02562 * 7 6 5 20 20 H 1.09000 * 109.47184 * 270.13088 * 1 2 3 21 21 H 1.09007 * 109.46974 * 30.12721 * 1 2 3 22 22 H 1.08996 * 109.47381 * 150.12690 * 1 2 3 23 23 H 1.08005 * 125.27440 * 179.70653 * 4 3 2 24 24 H 1.07996 * 126.31372 * 180.25297 * 9 8 7 25 25 H 0.97000 * 119.99167 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2999 1.0763 0.0000 4 6 3.5469 0.6884 -0.0061 5 8 3.5977 -0.6493 -0.0048 6 6 2.3250 -1.1102 0.0031 7 6 1.9012 -2.5088 0.0067 8 7 0.6459 -2.9280 0.0139 9 6 0.6281 -4.2533 0.0100 10 6 1.9580 -4.6889 0.0084 11 6 2.4033 -6.0098 0.0066 12 1 1.6895 -6.8204 0.0109 13 6 3.7774 -6.2862 -0.0068 14 7 4.6419 -5.3044 -0.0120 15 14 4.3741 -8.0563 -0.0172 16 1 3.8577 -8.7457 -1.2268 17 1 5.8587 -8.0781 -0.0302 18 1 3.8799 -8.7523 1.1980 19 8 2.7277 -3.5733 0.0031 20 1 -0.3633 0.0023 1.0277 21 1 -0.3633 0.8889 -0.5158 22 1 -0.3634 -0.8911 -0.5118 23 1 4.4043 1.3452 -0.0121 24 1 -0.2506 -4.8811 0.0102 25 1 5.5928 -5.4958 -0.0209 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074276574.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:11 Heat of formation + Delta-G solvation = -2.755596 kcal Electronic energy + Delta-G solvation = -14227.831158 eV Core-core repulsion = 11594.129368 eV Total energy + Delta-G solvation = -2633.701790 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.12841 -42.94161 -36.26670 -36.01679 -34.85974 -33.03157 -31.20418 -28.96555 -26.78844 -24.14004 -23.11711 -22.27223 -21.55190 -19.66057 -18.62514 -17.75209 -17.31281 -16.85072 -16.53181 -15.52127 -15.39168 -14.88710 -14.12907 -14.04982 -13.84552 -13.31679 -13.10165 -12.99237 -12.89435 -12.11982 -12.08672 -11.88320 -11.70067 -11.47897 -11.04359 -10.45611 -9.11450 -9.02051 -6.69584 -0.01297 1.08464 1.35720 1.54152 1.55561 1.65252 1.76653 2.08087 2.31004 2.57127 2.96538 3.34410 3.85212 3.90972 4.54504 4.58444 4.76924 4.81614 4.84294 4.95293 4.98296 5.12992 5.44163 5.54502 5.88110 5.99083 6.26158 6.36563 6.70779 7.38398 7.97810 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.049077 B = 0.008009 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.397860 B = 3495.220897 C = 4050.454741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.010 4.010 3 N -0.495 5.495 4 C 0.165 3.835 5 O -0.217 6.217 6 C 0.046 3.954 7 C 0.020 3.980 8 N -0.403 5.403 9 C -0.213 4.213 10 C 0.147 3.853 11 C -0.425 4.425 12 H 0.141 0.859 13 C 0.013 3.987 14 N -0.794 5.794 15 Si 1.019 2.981 16 H -0.246 1.246 17 H -0.268 1.268 18 H -0.246 1.246 19 O -0.211 6.211 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.303 0.697 24 H 0.190 0.810 25 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 1.392 -0.082 1.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.133 4.133 3 N -0.224 5.224 4 C -0.059 4.059 5 O -0.104 6.104 6 C -0.008 4.008 7 C -0.168 4.168 8 N -0.132 5.132 9 C -0.366 4.366 10 C 0.092 3.908 11 C -0.452 4.452 12 H 0.159 0.841 13 C -0.207 4.207 14 N -0.419 5.419 15 Si 0.835 3.165 16 H -0.169 1.169 17 H -0.192 1.192 18 H -0.169 1.169 19 O -0.101 6.101 20 H 0.094 0.906 21 H 0.106 0.894 22 H 0.095 0.905 23 H 0.318 0.682 24 H 0.207 0.793 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.439 2.648 -0.077 2.686 hybrid contribution 1.371 -1.554 0.018 2.073 sum 1.811 1.095 -0.059 2.117 Atomic orbital electron populations 1.20083 0.84610 1.03545 1.03078 1.22178 0.98648 0.85308 1.07130 1.70080 1.02012 1.31000 1.19316 1.29156 0.98418 0.78276 1.00049 1.84508 1.29280 1.25960 1.70644 1.19472 0.81729 0.89823 1.09777 1.20844 0.84295 0.85514 1.26180 1.69415 1.18855 1.13236 1.11683 1.23504 0.96439 0.89764 1.26897 1.21438 0.89085 0.87241 0.93066 1.19570 0.94597 0.89406 1.41612 0.84126 1.27589 0.96159 1.06329 0.90651 1.69877 1.05292 1.37516 1.29223 0.84690 0.77703 0.72873 0.81237 1.16930 1.19228 1.16934 1.84910 1.36370 1.14255 1.74583 0.90645 0.89441 0.90543 0.68177 0.79347 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 9.99 71.23 0.71 -1.31 15 2 C -0.01 -0.41 7.22 42.20 0.30 -0.11 15 3 N -0.50 -18.50 11.25 -301.76 -3.39 -21.89 15 4 C 0.17 5.38 13.19 130.43 1.72 7.10 15 5 O -0.22 -9.59 10.80 -9.15 -0.10 -9.69 15 6 C 0.05 2.24 7.34 24.24 0.18 2.42 15 7 C 0.02 1.12 8.07 86.67 0.70 1.81 15 8 N -0.40 -21.08 9.32 -301.92 -2.81 -23.89 15 9 C -0.21 -10.85 11.97 85.00 1.02 -9.83 15 10 C 0.15 8.12 6.82 22.96 0.16 8.27 15 11 C -0.42 -20.98 9.33 23.02 0.21 -20.77 15 12 H 0.14 5.96 7.85 -2.91 -0.02 5.94 15 13 C 0.01 0.61 5.50 85.31 0.47 1.08 15 14 N -0.79 -40.92 12.04 21.87 0.26 -40.66 15 15 Si 1.02 33.19 29.56 68.60 2.03 35.21 15 16 H -0.25 -7.52 7.11 99.48 0.71 -6.81 15 17 H -0.27 -8.44 7.11 99.48 0.71 -7.73 15 18 H -0.25 -7.52 7.11 99.48 0.71 -6.81 15 19 O -0.21 -12.63 9.19 -19.78 -0.18 -12.81 15 20 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 21 H 0.09 2.65 8.14 -2.38 -0.02 2.63 15 22 H 0.08 2.99 6.62 -2.39 -0.02 2.98 15 23 H 0.30 5.33 8.06 -2.91 -0.02 5.30 15 24 H 0.19 8.12 8.06 -2.91 -0.02 8.10 15 25 H 0.30 13.80 8.30 -92.71 -0.77 13.03 15 Total: -1.00 -68.39 238.06 2.50 -65.89 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.23 Total: 19.16 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.47 Total: -11.32 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -5.94 Total: -86.44 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.28 Total: -22.50 kcal Atomic # 14 Polarization: 33.19 SS G_CDS: 2.03 Total: 35.21 kcal Total: -68.39 2.50 -65.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276574.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.133 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds