Wall clock time and date at job start Mon Mar 30 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29976 * 127.30270 * 2 1 4 4 O 1.20613 * 112.66642 * 179.97438 * 3 2 1 5 5 C 1.33773 * 113.18372 * 0.02562 * 4 3 2 6 6 C 1.38718 * 106.05852 * 0.02562 * 5 4 3 7 7 C 1.47067 * 128.65500 * 180.02562 * 6 5 4 8 8 C 1.38827 * 126.57700 * 309.69230 * 7 6 5 9 9 N 1.32542 * 107.63648 * 179.82866 * 8 7 6 10 10 C 1.33055 * 108.98589 * 0.43267 * 9 8 7 11 11 C 1.39323 * 125.52861 * 179.74068 * 10 9 8 12 12 H 1.08006 * 119.99705 * 179.97438 * 11 10 9 13 13 C 1.40252 * 120.00083 * 359.97438 * 11 10 9 14 14 N 1.30692 * 120.00128 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00257 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46865 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47177 * 119.99280 * 15 13 11 18 18 H 1.48495 * 109.47197 * 239.99881 * 15 13 11 19 19 O 1.35018 * 108.94185 * 359.72514 * 10 9 8 20 20 H 1.09005 * 109.47244 * 90.02368 * 1 2 3 21 21 H 1.08998 * 109.47122 * 210.02379 * 1 2 3 22 22 H 1.08999 * 109.47030 * 330.02776 * 1 2 3 23 23 H 1.08004 * 126.97006 * 180.02562 * 5 4 3 24 24 H 1.07998 * 126.18218 * 359.97438 * 8 7 6 25 25 H 0.97002 * 120.00481 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2946 1.0339 0.0000 4 8 3.4616 0.7291 0.0005 5 6 3.6605 -0.5938 0.0004 6 6 2.3993 -1.1713 -0.0009 7 6 2.0422 -2.5980 -0.0010 8 6 2.5331 -3.5736 -0.8582 9 7 1.9647 -4.7237 -0.5252 10 6 1.1336 -4.5169 0.4932 11 6 0.3536 -5.4913 1.1122 12 1 -0.2924 -5.2233 1.9353 13 6 0.4071 -6.8200 0.6666 14 7 1.1883 -7.1442 -0.3297 15 14 -0.6382 -8.1266 1.4970 16 1 -1.4289 -7.5066 2.5906 17 1 -1.5592 -8.7306 0.5009 18 1 0.2426 -9.1811 2.0602 19 8 1.1692 -3.2098 0.8295 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 4.6103 -1.1078 0.0011 24 1 3.2504 -3.4230 -1.6514 25 1 1.2251 -8.0631 -0.6382 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074276579.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:48 Heat of formation + Delta-G solvation = 44.988865 kcal Electronic energy + Delta-G solvation = -14057.246492 eV Core-core repulsion = 11425.615058 eV Total energy + Delta-G solvation = -2631.631435 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.62837 -42.86584 -36.04403 -35.51925 -34.57112 -33.18295 -30.80265 -29.64150 -27.60289 -24.20183 -23.01626 -21.98285 -21.51697 -19.47461 -18.60279 -18.51568 -17.55772 -16.67393 -16.54377 -15.71072 -14.84588 -14.70660 -14.28581 -14.17659 -13.68957 -13.40566 -13.33399 -13.01041 -12.75111 -12.23911 -11.95675 -11.75261 -11.25197 -10.90451 -10.68798 -10.26375 -9.18990 -8.67519 -6.70444 0.36314 0.79896 1.26395 1.41621 1.59496 1.61782 2.13623 2.26135 2.38280 2.78229 3.23128 3.31486 3.50721 4.18164 4.21703 4.46502 4.54625 4.55698 4.68275 4.81041 4.94411 5.06285 5.18730 5.68492 5.86599 6.09166 6.42517 6.64714 7.34924 7.85283 8.27644 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.060903 B = 0.006847 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.633937 B = 4088.432051 C = 4380.106333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.008 3.992 3 N -0.380 5.380 4 O 0.098 5.902 5 C -0.034 4.034 6 C -0.117 4.117 7 C -0.156 4.156 8 C 0.021 3.979 9 N -0.568 5.568 10 C 0.303 3.697 11 C -0.454 4.454 12 H 0.103 0.897 13 C 0.030 3.970 14 N -0.759 5.759 15 Si 1.014 2.986 16 H -0.250 1.250 17 H -0.260 1.260 18 H -0.260 1.260 19 O -0.254 6.254 20 H 0.089 0.911 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.262 0.738 24 H 0.182 0.818 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 5.153 0.896 5.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.152 4.152 3 N -0.088 5.088 4 O 0.035 5.965 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.210 4.210 8 C -0.128 4.128 9 N -0.298 5.298 10 C 0.122 3.878 11 C -0.488 4.488 12 H 0.121 0.879 13 C -0.192 4.192 14 N -0.383 5.383 15 Si 0.832 3.168 16 H -0.173 1.173 17 H -0.184 1.184 18 H -0.184 1.184 19 O -0.151 6.151 20 H 0.107 0.893 21 H 0.086 0.914 22 H 0.112 0.888 23 H 0.277 0.723 24 H 0.199 0.801 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.743 5.709 0.511 5.780 hybrid contribution -0.370 -0.703 0.367 0.875 sum 0.373 5.006 0.877 5.096 Atomic orbital electron populations 1.20131 0.84799 1.03692 1.03942 1.25337 0.99695 0.87855 1.02330 1.73382 0.90069 1.24136 1.21168 1.84487 1.20365 1.23790 1.67828 1.26998 1.00245 0.82253 1.01921 1.19934 0.93021 0.89033 1.10202 1.19942 1.06918 0.91511 1.02626 1.24085 1.00738 0.88557 0.99394 1.71283 1.16176 1.24962 1.17414 1.22712 0.94363 0.79364 0.91315 1.18732 1.22154 0.91203 1.16721 0.87933 1.27058 0.96507 1.00769 0.94905 1.70093 1.28001 1.21092 1.19129 0.84695 0.77629 0.75758 0.78766 1.17341 1.18434 1.18417 1.84496 1.55010 1.23187 1.52437 0.89255 0.91436 0.88794 0.72263 0.80084 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.15 10.49 71.23 0.75 -1.41 15 2 C 0.01 0.31 7.59 45.20 0.34 0.65 15 3 N -0.38 -13.06 11.98 -44.15 -0.53 -13.59 15 4 O 0.10 2.97 11.07 74.50 0.82 3.79 15 5 C -0.03 -1.00 12.43 67.93 0.84 -0.15 15 6 C -0.12 -4.55 6.47 -18.48 -0.12 -4.67 15 7 C -0.16 -7.44 7.35 24.73 0.18 -7.26 15 8 C 0.02 1.02 11.94 84.73 1.01 2.03 15 9 N -0.57 -32.52 9.35 -307.50 -2.87 -35.39 15 10 C 0.30 17.42 7.70 84.77 0.65 18.08 15 11 C -0.45 -24.56 9.43 23.02 0.22 -24.34 15 12 H 0.10 5.14 7.85 -2.91 -0.02 5.11 15 13 C 0.03 1.49 5.50 85.35 0.47 1.96 15 14 N -0.76 -39.99 11.85 21.88 0.26 -39.73 15 15 Si 1.01 35.85 29.56 68.60 2.03 37.88 15 16 H -0.25 -8.45 7.11 99.48 0.71 -7.75 15 17 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 18 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 19 O -0.25 -13.85 10.84 -18.06 -0.20 -14.04 15 20 H 0.09 2.56 8.14 -2.38 -0.02 2.54 15 21 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.09 2.47 8.14 -2.39 -0.02 2.46 15 23 H 0.26 5.13 8.06 -2.91 -0.02 5.11 15 24 H 0.18 7.30 8.06 -2.91 -0.02 7.28 15 25 H 0.29 13.54 8.29 -92.71 -0.77 12.77 15 Total: -1.00 -67.43 241.56 5.08 -62.34 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.22 Total: 13.85 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 4.35 Total: -15.12 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -3.14 Total: -88.71 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.63 Total: -10.25 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -67.43 5.08 -62.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276579.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.331 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds