Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30625 * 125.25332 * 2 1 4 4 C 1.33634 * 109.12839 * 179.76884 * 3 2 1 5 5 C 1.38214 * 107.19956 * 0.40343 * 4 3 2 6 6 C 1.41671 * 126.77620 * 179.87287 * 5 4 3 7 7 C 1.39248 * 126.61231 * 179.70443 * 6 5 4 8 8 N 1.32353 * 107.60871 * 180.02562 * 7 6 5 9 9 C 1.33184 * 109.06329 * 0.02562 * 8 7 6 10 10 C 1.39173 * 125.49199 * 179.97438 * 9 8 7 11 11 H 1.08010 * 119.99323 * 180.02562 * 10 9 8 12 12 C 1.40226 * 120.00521 * 0.02562 * 10 9 8 13 13 N 1.30705 * 119.99648 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47049 * 90.00063 * 14 12 10 16 16 H 1.48499 * 109.46928 * 210.00225 * 14 12 10 17 17 H 1.48502 * 109.46908 * 329.99875 * 14 12 10 18 18 O 1.35010 * 109.00507 * 359.97438 * 9 8 7 19 19 O 1.33934 * 125.25001 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.46954 * 269.97228 * 1 2 3 21 21 H 1.08999 * 109.46380 * 29.97236 * 1 2 3 22 22 H 1.08997 * 109.47002 * 149.96953 * 1 2 3 23 23 H 1.07993 * 126.39778 * 180.27581 * 4 3 2 24 24 H 1.07997 * 126.19924 * 0.04947 * 7 6 5 25 25 H 0.97001 * 119.99559 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2610 1.0667 0.0000 4 6 3.5448 0.6956 0.0051 5 6 3.5707 -0.6863 -0.0009 6 6 4.7212 -1.5130 -0.0010 7 6 4.7434 -2.9054 -0.0013 8 7 6.0111 -3.2856 -0.0008 9 6 6.7894 -2.2049 0.0003 10 6 8.1811 -2.2114 0.0017 11 1 8.7254 -1.2785 0.0030 12 6 8.8767 -3.4290 0.0013 13 7 8.2179 -4.5579 -0.0007 14 14 10.7447 -3.4376 0.0039 15 1 11.2377 -3.4414 1.4045 16 1 11.2350 -4.6516 -0.6968 17 1 11.2462 -2.2266 -0.6943 18 8 6.0105 -1.1021 0.0000 19 8 2.2800 -1.0938 -0.0005 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3632 0.8903 -0.5134 22 1 -0.3633 -0.8897 -0.5143 23 1 4.4018 1.3526 0.0106 24 1 3.8821 -3.5570 -0.0022 25 1 8.6991 -5.4001 -0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074276583.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = 27.648017 kcal Electronic energy + Delta-G solvation = -13919.494447 eV Core-core repulsion = 11287.111056 eV Total energy + Delta-G solvation = -2632.383390 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.43724 -41.09122 -34.35266 -34.14525 -32.80059 -32.02009 -29.79664 -27.70999 -24.84865 -22.19719 -21.57473 -20.60592 -19.94477 -17.78476 -16.63490 -16.17279 -15.84008 -15.05809 -14.75228 -14.15053 -13.54248 -13.12746 -12.86514 -12.74658 -12.33373 -11.99451 -11.56042 -11.55161 -11.05482 -10.68342 -10.63184 -10.07880 -10.01398 -9.63685 -8.89578 -8.60950 -7.09269 -7.06658 -4.91165 1.55001 2.74851 2.84432 2.91186 3.01361 3.03326 3.58774 3.60990 4.17340 4.54543 4.87789 4.98553 5.47073 5.56025 5.69092 5.73892 5.81162 6.01209 6.32306 6.47614 6.67615 6.78165 7.04240 7.29141 7.58465 7.75893 8.07858 8.31791 8.41455 9.52265 9.80933 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.089254 B = 0.006121 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.637789 B = 4573.120077 C = 4871.613328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C 0.116 3.884 3 N -0.465 5.465 4 C -0.102 4.102 5 C 0.121 3.879 6 C -0.188 4.188 7 C 0.086 3.914 8 N -0.527 5.527 9 C 0.338 3.662 10 C -0.398 4.398 11 H 0.103 0.897 12 C 0.067 3.933 13 N -0.702 5.702 14 Si 0.937 3.063 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.256 1.256 18 O -0.230 6.230 19 O -0.201 6.201 20 H 0.080 0.920 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.176 0.824 24 H 0.160 0.840 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 2.000 -0.009 4.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.087 4.087 3 N -0.194 5.194 4 C -0.243 4.243 5 C 0.067 3.933 6 C -0.242 4.242 7 C -0.072 4.072 8 N -0.255 5.255 9 C 0.163 3.837 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.162 4.162 13 N -0.324 5.324 14 Si 0.759 3.241 15 H -0.187 1.187 16 H -0.195 1.195 17 H -0.179 1.179 18 O -0.128 6.128 19 O -0.089 6.089 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.193 0.807 24 H 0.177 0.823 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.450 1.734 -0.017 4.776 hybrid contribution 0.740 -0.072 0.015 0.744 sum -3.710 1.662 -0.002 4.065 Atomic orbital electron populations 1.19988 0.82286 1.04044 1.03562 1.25738 0.95765 0.78659 1.08552 1.69877 1.02840 1.30239 1.16409 1.23291 0.93975 0.92148 1.14932 1.18534 0.80687 0.92332 1.01768 1.17518 0.81599 0.91892 1.33150 1.23998 0.96645 0.91285 0.95282 1.71377 0.99019 1.27651 1.27425 1.22296 0.93067 0.77071 0.91234 1.18404 0.85877 0.95560 1.43160 0.87889 1.26080 1.02587 0.94215 0.93307 1.70008 1.38608 0.98777 1.25045 0.85825 0.78911 0.79560 0.79805 1.18732 1.19476 1.17909 1.84543 1.14005 1.36395 1.77886 1.84323 1.15682 1.36933 1.71998 0.90098 0.89025 0.90223 0.80665 0.82283 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.48 10.51 36.01 0.38 -0.10 15 2 C 0.12 2.11 8.30 -12.79 -0.11 2.00 15 3 N -0.46 -9.40 11.25 -10.31 -0.12 -9.52 15 4 C -0.10 -2.19 11.94 -16.78 -0.20 -2.39 15 5 C 0.12 2.76 7.05 -38.28 -0.27 2.49 15 6 C -0.19 -4.72 7.06 -37.90 -0.27 -4.98 15 7 C 0.09 2.13 11.92 -16.95 -0.20 1.93 15 8 N -0.53 -14.52 9.33 -12.83 -0.12 -14.64 15 9 C 0.34 9.27 7.69 -16.62 -0.13 9.14 15 10 C -0.40 -10.08 9.42 -38.49 -0.36 -10.45 15 11 H 0.10 2.38 7.85 -52.48 -0.41 1.97 15 12 C 0.07 1.56 5.50 -17.28 -0.10 1.47 15 13 N -0.70 -17.42 11.84 55.56 0.66 -16.76 15 14 Si 0.94 16.79 29.56 -169.99 -5.03 11.76 15 15 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 16 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 17 H -0.26 -4.48 7.11 56.52 0.40 -4.07 15 18 O -0.23 -6.14 10.85 0.84 0.01 -6.13 15 19 O -0.20 -4.14 10.79 3.72 0.04 -4.10 15 20 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.18 3.54 8.06 -52.49 -0.42 3.12 15 24 H 0.16 3.40 8.06 -52.49 -0.42 2.98 15 25 H 0.29 6.29 8.29 -40.82 -0.34 5.95 15 LS Contribution 241.02 15.07 3.63 3.63 Total: -1.00 -30.17 241.02 -3.83 -34.00 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -1.66 Total: 2.66 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.25 Total: -0.90 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.42 Total: -40.93 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.05 Total: -10.23 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.17 -3.83 -34.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276583.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.650 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds