Wall clock time and date at job start Mon Mar 30 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30506 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48503 * 109.46839 * 240.00135 * 3 2 1 5 5 H 1.48499 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47621 * 120.00008 * 3 2 1 7 7 C 1.40468 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.40338 * 119.99870 * 0.02562 * 7 2 1 10 10 N 1.33323 * 126.79374 * 179.97438 * 9 7 2 11 11 C 1.33567 * 105.51575 * 180.02562 * 10 9 7 12 12 C 1.50704 * 126.07099 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47062 * 90.00051 * 12 11 10 14 14 C 1.34517 * 125.79067 * 90.00245 * 13 12 11 15 15 C 1.41388 * 106.83576 * 179.97438 * 14 13 12 16 16 C 1.34511 * 106.84442 * 359.97438 * 15 14 13 17 17 O 1.34295 * 108.42007 * 0.27361 * 16 15 14 18 18 N 1.30453 * 107.85531 * 0.26302 * 11 10 9 19 19 O 1.21282 * 110.68092 * 359.53547 * 18 11 10 20 20 H 0.97002 * 119.99885 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47169 * 329.99687 * 12 11 10 22 22 H 1.09004 * 109.46626 * 209.99694 * 12 11 10 23 23 H 1.07992 * 126.58259 * 359.93887 * 14 13 12 24 24 H 1.08001 * 126.57171 * 180.02562 * 15 14 13 25 25 H 1.08002 * 125.78644 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 3.0927 1.6964 -1.2126 5 1 1.2740 2.7465 -0.0006 6 1 3.0928 1.6966 1.2124 7 6 2.0074 -1.2165 0.0005 8 1 3.0874 -1.2164 0.0001 9 6 1.3057 -2.4318 0.0005 10 7 1.8311 -3.6572 0.0005 11 6 0.7890 -4.4927 0.0000 12 6 0.8587 -5.9981 0.0003 13 6 0.8810 -6.4997 1.4212 14 6 -0.1974 -6.8120 2.1622 15 6 0.2811 -7.2363 3.4231 16 6 1.6232 -7.1585 3.3770 17 8 1.9806 -6.7063 2.1641 18 7 -0.2998 -3.7742 -0.0061 19 8 -0.0323 -2.5912 0.0000 20 1 -0.4850 0.8401 -0.0004 21 1 1.7649 -6.3200 -0.5129 22 1 -0.0132 -6.4023 -0.5141 23 1 -1.2304 -6.7499 1.8534 24 1 -0.3164 -7.5615 4.2620 25 1 2.2985 -7.4116 4.1810 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074276628.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:40 Heat of formation + Delta-G solvation = 58.975534 kcal Electronic energy + Delta-G solvation = -14061.355722 eV Core-core repulsion = 11430.330795 eV Total energy + Delta-G solvation = -2631.024927 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.05674 -42.17080 -34.40364 -34.11627 -32.68830 -31.66630 -29.81411 -26.68724 -26.25260 -21.75553 -21.33858 -21.10418 -19.99226 -17.81382 -16.91921 -15.87834 -15.60477 -15.43349 -14.85584 -14.25385 -13.59496 -12.87246 -12.72765 -12.50390 -12.42503 -11.77919 -11.59629 -11.45185 -11.32749 -10.54531 -10.10474 -9.93898 -9.60387 -9.55274 -8.92639 -8.33801 -8.11021 -7.08877 -5.03052 2.04686 2.79813 2.91149 2.95813 2.99875 3.18360 3.41798 3.73428 3.94230 4.97043 5.11504 5.13645 5.29191 5.33804 5.42930 5.58578 5.95307 6.09745 6.21520 6.40066 6.54111 6.81337 6.84376 7.35039 7.49798 7.88794 8.09230 8.30289 8.45659 9.90322 10.35204 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.006843 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.148586 B = 4090.509477 C = 4232.506775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.071 3.929 3 Si 0.937 3.063 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.113 0.887 9 C 0.303 3.697 10 N -0.609 5.609 11 C 0.157 3.843 12 C 0.062 3.938 13 C 0.013 3.987 14 C -0.210 4.210 15 C -0.216 4.216 16 C -0.051 4.051 17 O -0.168 6.168 18 N -0.463 5.463 19 O 0.048 5.952 20 H 0.293 0.707 21 H 0.098 0.902 22 H 0.106 0.894 23 H 0.146 0.854 24 H 0.144 0.856 25 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 -6.084 3.215 6.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.154 4.154 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.453 4.453 8 H 0.131 0.869 9 C 0.112 3.888 10 N -0.353 5.353 11 C -0.117 4.117 12 C 0.023 3.977 13 C -0.039 4.039 14 C -0.229 4.229 15 C -0.235 4.235 16 C -0.119 4.119 17 O -0.064 6.064 18 N -0.192 5.192 19 O 0.000 6.000 20 H 0.104 0.896 21 H 0.116 0.884 22 H 0.125 0.875 23 H 0.164 0.836 24 H 0.162 0.838 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.842 -6.501 3.093 7.248 hybrid contribution 0.111 0.919 0.304 0.974 sum 0.953 -5.582 3.396 6.603 Atomic orbital electron populations 1.69626 1.07783 1.30953 1.30754 1.26203 0.95126 1.02289 0.91820 0.85876 0.79635 0.78080 0.80429 1.18333 1.19843 1.18355 1.18544 0.95019 0.85491 1.46279 0.86948 1.24206 0.79917 0.93957 0.90708 1.72238 1.28290 0.98558 1.36201 1.24534 0.86892 0.97065 1.03241 1.18012 1.04632 0.86941 0.88118 1.22235 0.83997 1.02705 0.94933 1.21563 0.99582 1.07418 0.94360 1.21767 0.94707 1.07883 0.99157 1.23940 0.96307 1.04378 0.87252 1.84052 1.34965 1.64723 1.22641 1.74307 1.24465 0.91082 1.29359 1.85530 1.25770 1.17709 1.70997 0.89594 0.88361 0.87543 0.83576 0.83789 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.58 12.06 55.57 0.67 -18.91 15 2 C 0.07 1.72 5.50 -17.28 -0.10 1.63 15 3 Si 0.94 17.67 29.56 -169.99 -5.03 12.64 15 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 7 C -0.42 -11.12 9.48 -37.95 -0.36 -11.48 15 8 H 0.11 2.83 7.85 -52.49 -0.41 2.41 15 9 C 0.30 8.76 7.81 -16.36 -0.13 8.64 15 10 N -0.61 -17.08 11.61 -11.51 -0.13 -17.22 15 11 C 0.16 4.00 7.41 -156.78 -1.16 2.84 15 12 C 0.06 1.20 6.38 -29.03 -0.19 1.02 15 13 C 0.01 0.25 6.56 -35.63 -0.23 0.01 15 14 C -0.21 -3.69 10.81 -39.70 -0.43 -4.12 15 15 C -0.22 -3.30 10.91 -39.70 -0.43 -3.74 15 16 C -0.05 -0.77 12.09 29.41 0.36 -0.41 15 17 O -0.17 -3.18 10.65 5.71 0.06 -3.12 15 18 N -0.46 -12.76 12.15 31.51 0.38 -12.37 15 19 O 0.05 1.41 9.74 15.13 0.15 1.56 15 20 H 0.29 6.64 8.29 -40.82 -0.34 6.30 15 21 H 0.10 1.75 8.14 -51.93 -0.42 1.32 15 22 H 0.11 1.77 8.14 -51.93 -0.42 1.35 15 23 H 0.15 2.38 8.06 -52.49 -0.42 1.96 15 24 H 0.14 1.76 8.06 -52.49 -0.42 1.33 15 25 H 0.20 2.07 8.06 -52.49 -0.42 1.65 15 LS Contribution 240.65 15.07 3.63 3.63 Total: -1.00 -31.81 240.65 -4.60 -36.41 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -1.66 Total: 2.99 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.67 Total: -5.62 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.92 Total: -48.50 kcal Atomic # 8 Polarization: -1.76 SS G_CDS: 0.21 Total: -1.56 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.81 -4.60 -36.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276628.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.387 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds