Wall clock time and date at job start Mon Mar 30 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30506 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48503 * 109.46839 * 240.00135 * 3 2 1 5 5 H 1.48499 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47621 * 120.00008 * 3 2 1 7 7 C 1.40468 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.40338 * 119.99870 * 0.02562 * 7 2 1 10 10 N 1.33323 * 126.79374 * 179.97438 * 9 7 2 11 11 C 1.33567 * 105.51575 * 180.02562 * 10 9 7 12 12 C 1.50704 * 126.07099 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47062 * 90.00051 * 12 11 10 14 14 C 1.34517 * 125.79067 * 90.00245 * 13 12 11 15 15 C 1.41388 * 106.83576 * 179.97438 * 14 13 12 16 16 C 1.34511 * 106.84442 * 359.97438 * 15 14 13 17 17 O 1.34295 * 108.42007 * 0.27361 * 16 15 14 18 18 N 1.30453 * 107.85531 * 0.26302 * 11 10 9 19 19 O 1.21282 * 110.68092 * 359.53547 * 18 11 10 20 20 H 0.97002 * 119.99885 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47169 * 329.99687 * 12 11 10 22 22 H 1.09004 * 109.46626 * 209.99694 * 12 11 10 23 23 H 1.07992 * 126.58259 * 359.93887 * 14 13 12 24 24 H 1.08001 * 126.57171 * 180.02562 * 15 14 13 25 25 H 1.08002 * 125.78644 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 3.0927 1.6964 -1.2126 5 1 1.2740 2.7465 -0.0006 6 1 3.0928 1.6966 1.2124 7 6 2.0074 -1.2165 0.0005 8 1 3.0874 -1.2164 0.0001 9 6 1.3057 -2.4318 0.0005 10 7 1.8311 -3.6572 0.0005 11 6 0.7890 -4.4927 0.0000 12 6 0.8587 -5.9981 0.0003 13 6 0.8810 -6.4997 1.4212 14 6 -0.1974 -6.8120 2.1622 15 6 0.2811 -7.2363 3.4231 16 6 1.6232 -7.1585 3.3770 17 8 1.9806 -6.7063 2.1641 18 7 -0.2998 -3.7742 -0.0061 19 8 -0.0323 -2.5912 0.0000 20 1 -0.4850 0.8401 -0.0004 21 1 1.7649 -6.3200 -0.5129 22 1 -0.0132 -6.4023 -0.5141 23 1 -1.2304 -6.7499 1.8534 24 1 -0.3164 -7.5615 4.2620 25 1 2.2985 -7.4116 4.1810 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074276628.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:39 Heat of formation + Delta-G solvation = 36.145928 kcal Electronic energy + Delta-G solvation = -14062.345688 eV Core-core repulsion = 11430.330795 eV Total energy + Delta-G solvation = -2632.014893 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.08909 -43.48467 -36.27484 -36.09147 -34.12461 -33.34602 -31.61432 -28.60124 -27.84877 -23.73562 -22.97391 -22.64578 -21.45721 -19.67821 -18.35401 -17.78492 -17.38897 -17.07677 -16.70665 -15.63247 -15.25264 -14.63482 -14.23574 -13.76023 -13.65251 -13.58284 -13.44174 -13.08207 -12.83656 -12.16820 -12.00902 -11.88012 -11.42730 -11.02116 -10.87817 -10.35528 -9.45023 -8.96933 -7.11996 0.69161 0.98576 1.40474 1.50444 1.59025 1.68256 1.92339 2.15043 2.23417 3.00147 3.21377 3.51209 3.75981 3.90991 4.11771 4.23653 4.48093 4.65008 4.88075 4.91980 4.99782 5.11651 5.44020 5.60473 5.84247 6.04570 6.19739 6.26351 6.42747 8.04925 8.26221 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.006843 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.148586 B = 4090.509477 C = 4232.506775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.029 3.971 3 Si 1.023 2.977 4 H -0.249 1.249 5 H -0.258 1.258 6 H -0.251 1.251 7 C -0.434 4.434 8 H 0.122 0.878 9 C 0.270 3.730 10 N -0.638 5.638 11 C 0.167 3.833 12 C 0.064 3.936 13 C -0.025 4.025 14 C -0.212 4.212 15 C -0.225 4.225 16 C -0.043 4.043 17 O -0.192 6.192 18 N -0.487 5.487 19 O 0.013 5.987 20 H 0.307 0.693 21 H 0.111 0.889 22 H 0.131 0.869 23 H 0.153 0.847 24 H 0.177 0.823 25 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -5.571 4.182 7.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.193 4.193 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.182 1.182 6 H -0.175 1.175 7 C -0.471 4.471 8 H 0.140 0.860 9 C 0.082 3.918 10 N -0.383 5.383 11 C -0.107 4.107 12 C 0.026 3.974 13 C -0.075 4.075 14 C -0.231 4.231 15 C -0.244 4.244 16 C -0.110 4.110 17 O -0.089 6.089 18 N -0.222 5.222 19 O -0.029 6.029 20 H 0.118 0.882 21 H 0.129 0.871 22 H 0.149 0.851 23 H 0.171 0.829 24 H 0.194 0.806 25 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.569 -5.976 4.056 7.391 hybrid contribution -0.137 0.713 0.067 0.729 sum 1.432 -5.262 4.123 6.837 Atomic orbital electron populations 1.69683 1.09762 1.33102 1.29631 1.27410 0.95927 1.05809 0.90191 0.84648 0.78235 0.72306 0.80910 1.17301 1.18206 1.17487 1.19128 0.95775 0.86144 1.46048 0.86036 1.24827 0.80229 0.95159 0.91630 1.72232 1.29342 0.98846 1.37882 1.25466 0.85725 0.99383 1.00161 1.18207 1.06479 0.83153 0.89609 1.22148 0.84780 1.05424 0.95181 1.21896 0.99629 1.06282 0.95281 1.22180 0.95217 1.07816 0.99177 1.24921 0.97391 1.02067 0.86584 1.84030 1.35361 1.65442 1.24075 1.74237 1.25338 0.90784 1.31820 1.85468 1.26062 1.18726 1.72661 0.88170 0.87105 0.85073 0.82924 0.80595 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.88 12.06 21.91 0.26 -40.62 15 2 C 0.03 1.38 5.50 85.43 0.47 1.85 15 3 Si 1.02 34.74 29.56 68.60 2.03 36.77 15 4 H -0.25 -8.07 7.11 99.48 0.71 -7.37 15 5 H -0.26 -8.09 7.11 99.48 0.71 -7.38 15 6 H -0.25 -8.19 7.11 99.48 0.71 -7.48 15 7 C -0.43 -23.53 9.48 23.32 0.22 -23.30 15 8 H 0.12 6.15 7.85 -2.91 -0.02 6.12 15 9 C 0.27 16.12 7.81 85.06 0.66 16.78 15 10 N -0.64 -36.79 11.61 -305.23 -3.54 -40.34 15 11 C 0.17 8.74 7.41 138.61 1.03 9.77 15 12 C 0.06 2.50 6.38 29.10 0.19 2.69 15 13 C -0.02 -0.94 6.56 24.83 0.16 -0.77 15 14 C -0.21 -7.23 10.81 22.19 0.24 -6.99 15 15 C -0.23 -6.35 10.91 22.19 0.24 -6.11 15 16 C -0.04 -1.19 12.09 66.97 0.81 -0.38 15 17 O -0.19 -7.11 10.65 -2.47 -0.03 -7.13 15 18 N -0.49 -27.69 12.15 -56.62 -0.69 -28.38 15 19 O 0.01 0.80 9.74 64.22 0.63 1.42 15 20 H 0.31 13.74 8.29 -92.71 -0.77 12.97 15 21 H 0.11 3.95 8.14 -2.39 -0.02 3.93 15 22 H 0.13 4.33 8.14 -2.38 -0.02 4.32 15 23 H 0.15 4.86 8.06 -2.91 -0.02 4.84 15 24 H 0.18 3.69 8.06 -2.91 -0.02 3.66 15 25 H 0.24 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -70.93 240.65 3.90 -67.02 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.22 Total: 17.72 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.02 Total: -6.46 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.97 Total: -109.34 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: 0.60 Total: -5.71 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -70.93 3.90 -67.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276628.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.169 kcal (2) G-P(sol) polarization free energy of solvation -70.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds