Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.47199 * 109.47205 * 2 1 4 4 N 2.60796 * 109.47279 * 0.02562 * 2 1 3 5 5 C 1.53000 * 109.46990 * 240.00135 * 2 1 3 6 6 C 1.50700 * 109.47088 * 59.99983 * 5 2 1 7 7 H 1.08004 * 120.00131 * 0.02562 * 6 5 2 8 8 C 1.37878 * 120.00276 * 179.97438 * 6 5 2 9 9 N 1.31514 * 120.00129 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99642 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47293 * 89.99800 * 10 8 6 12 12 H 1.48506 * 109.46784 * 209.99554 * 10 8 6 13 13 H 1.48498 * 109.47125 * 329.99480 * 10 8 6 14 14 C 1.50700 * 109.47219 * 120.00198 * 2 1 3 15 15 C 1.29445 * 117.95968 * 120.01963 * 14 2 1 16 16 C 1.50072 * 124.07465 * 180.44784 * 15 14 2 17 17 C 1.53026 * 110.14449 * 342.86958 * 16 15 14 18 18 C 1.53392 * 108.43765 * 49.43668 * 17 16 15 19 19 C 1.50062 * 117.96422 * 300.00053 * 14 2 1 20 20 H 1.09004 * 109.47412 * 299.99805 * 1 2 3 21 21 H 1.08999 * 109.47414 * 59.99727 * 1 2 3 22 22 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47288 * 179.97438 * 5 2 1 24 24 H 1.08997 * 109.47145 * 300.00375 * 5 2 1 25 25 H 0.97006 * 119.99763 * 180.02562 * 9 8 6 26 26 H 1.07997 * 117.96344 * 0.47138 * 15 14 2 27 27 H 1.09000 * 109.35750 * 222.66210 * 16 15 14 28 28 H 1.09002 * 109.35438 * 103.07648 * 16 15 14 29 29 H 1.09003 * 109.63872 * 169.11991 * 17 16 15 30 30 H 1.08996 * 109.64028 * 289.74986 * 17 16 15 31 31 H 1.08999 * 109.64670 * 52.25204 * 18 17 16 32 32 H 1.09002 * 109.63753 * 172.88020 * 18 17 16 33 33 H 1.09002 * 109.35957 * 42.68033 * 19 14 2 34 34 H 1.08998 * 109.36039 * 283.09675 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3993 2.4588 0.0011 5 6 2.0399 -0.7212 -1.2493 6 6 1.5376 -0.0108 -2.4797 7 1 0.9170 0.8676 -2.3806 8 6 1.8710 -0.4814 -3.7320 9 7 1.4330 0.1389 -4.8058 10 14 2.9449 -2.0002 -3.9035 11 1 2.0863 -3.2110 -3.9495 12 1 3.7372 -1.9074 -5.1561 13 1 3.8650 -2.0897 -2.7413 14 6 2.0323 -0.7104 1.2304 15 6 2.7739 -1.7585 1.0658 16 6 3.3388 -2.5741 2.1918 17 6 3.2828 -1.7791 3.4981 18 6 1.8676 -1.2097 3.6592 19 6 1.6421 -0.1586 2.5702 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1299 -0.7209 -1.2495 24 1 1.6765 -1.7488 -1.2493 25 1 1.6673 -0.1925 -5.6869 26 1 3.0005 -2.0649 0.0553 27 1 4.3746 -2.8298 1.9685 28 1 2.7582 -3.4902 2.3010 29 1 3.5109 -2.4366 4.3371 30 1 4.0042 -0.9630 3.4615 31 1 1.1360 -2.0106 3.5526 32 1 1.7685 -0.7470 4.6412 33 1 0.5892 0.1229 2.5523 34 1 2.2458 0.7224 2.7879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075578819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = 18.161963 kcal Electronic energy + Delta-G solvation = -14886.988228 eV Core-core repulsion = 12591.285591 eV Total energy + Delta-G solvation = -2295.702636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.33522 -36.37259 -34.29767 -32.41171 -30.78536 -29.59156 -27.73314 -24.49632 -22.97249 -22.02628 -20.76817 -17.86512 -17.18964 -15.93513 -15.11788 -14.32188 -14.22854 -13.82530 -13.67032 -13.08911 -12.86291 -12.68287 -12.52239 -12.31606 -12.14110 -11.82020 -11.45715 -11.21493 -11.10164 -11.00488 -10.70094 -10.50419 -10.35448 -10.18068 -9.83193 -9.47893 -9.16690 -8.61686 -8.52354 -6.10145 -4.10093 2.49886 3.25381 3.34409 3.34770 3.62543 3.65943 4.38291 4.71991 4.85084 4.95333 4.98317 5.23942 5.36105 5.45252 5.57549 5.66774 5.70658 5.80086 5.84768 5.91663 6.02025 6.09789 6.13197 6.27044 6.36756 6.41348 6.54185 6.83107 6.87933 6.98959 7.09323 7.35033 7.65373 8.38950 8.45165 8.92926 9.49869 11.02731 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.030559 B = 0.009659 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.046199 B = 2898.052569 C = 3443.230126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.077 3.923 3 C 0.252 3.748 4 N -0.468 5.468 5 C -0.003 4.003 6 C -0.525 4.525 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.264 1.264 14 C -0.112 4.112 15 C -0.157 4.157 16 C -0.087 4.087 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.086 4.086 20 H 0.046 0.954 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.026 0.974 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.123 0.877 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -7.207 14.966 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 C -0.065 4.065 4 N -0.144 5.144 5 C -0.041 4.041 6 C -0.562 4.562 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.189 1.189 14 C -0.114 4.114 15 C -0.174 4.174 16 C -0.124 4.124 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.123 4.123 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.141 0.859 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.234 -5.566 14.758 15.821 hybrid contribution 0.455 -1.131 -0.492 1.314 sum 1.688 -6.696 14.265 15.849 Atomic orbital electron populations 1.21774 0.91571 1.02932 1.02149 1.17356 0.96539 0.83296 0.95496 1.28835 0.92398 0.94254 0.91057 1.81011 1.09915 1.12830 1.10613 1.19802 0.96832 0.96017 0.91449 1.21056 1.32747 1.13671 0.88768 0.90548 1.24974 0.95454 0.96799 0.95816 1.69904 1.45335 1.40292 0.97971 0.86871 0.81311 0.83762 0.77985 1.19975 1.21294 1.18860 1.20628 0.99461 0.97189 0.94078 1.22322 0.97939 0.96804 1.00375 1.20434 1.00724 0.98029 0.93234 1.21621 0.97361 0.99720 0.97198 1.21571 0.97169 0.98614 0.98000 1.20429 1.01795 0.98127 0.91947 0.93521 0.90215 0.91254 0.95537 0.94611 0.92594 0.85888 0.91277 0.91010 0.92115 0.91915 0.91622 0.92058 0.90675 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.94 37.15 0.29 -1.85 16 2 C 0.08 1.45 0.56 -158.45 -0.09 1.36 16 3 C 0.25 5.39 12.48 -20.76 -0.26 5.13 16 4 N -0.47 -10.81 18.54 42.15 0.78 -10.03 16 5 C 0.00 -0.06 1.68 -27.88 -0.05 -0.11 16 6 C -0.52 -14.15 8.35 -34.44 -0.29 -14.43 16 7 H 0.08 2.25 6.63 -52.48 -0.35 1.90 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 10 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 14 C -0.11 -1.76 4.68 -100.94 -0.47 -2.23 16 15 C -0.16 -2.35 8.85 -35.90 -0.32 -2.66 16 16 C -0.09 -1.02 6.12 -28.17 -0.17 -1.20 16 17 C -0.12 -1.29 6.01 -26.51 -0.16 -1.45 16 18 C -0.12 -1.24 6.01 -26.52 -0.16 -1.40 16 19 C -0.09 -1.13 5.32 -28.18 -0.15 -1.28 16 20 H 0.05 0.67 6.74 -51.93 -0.35 0.32 16 21 H 0.08 1.54 6.62 -51.93 -0.34 1.20 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.03 0.60 6.43 -51.93 -0.33 0.27 16 24 H 0.04 0.75 6.82 -51.93 -0.35 0.39 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.12 2.03 5.12 -52.49 -0.27 1.76 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.93 6.53 -51.93 -0.34 0.59 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 272.48 15.07 4.11 4.11 Total: -1.00 -30.31 272.48 -5.81 -36.12 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.88 Total: -1.74 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.92 Total: -18.22 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 1.55 Total: -36.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.31 -5.81 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075578819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.283 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds