Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.47199 * 109.47205 * 2 1 4 4 N 2.60796 * 109.47279 * 0.02562 * 2 1 3 5 5 C 1.53000 * 109.46990 * 240.00135 * 2 1 3 6 6 C 1.50700 * 109.47088 * 59.99983 * 5 2 1 7 7 H 1.08004 * 120.00131 * 0.02562 * 6 5 2 8 8 C 1.37878 * 120.00276 * 179.97438 * 6 5 2 9 9 N 1.31514 * 120.00129 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99642 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47293 * 89.99800 * 10 8 6 12 12 H 1.48506 * 109.46784 * 209.99554 * 10 8 6 13 13 H 1.48498 * 109.47125 * 329.99480 * 10 8 6 14 14 C 1.50700 * 109.47219 * 120.00198 * 2 1 3 15 15 C 1.29445 * 117.95968 * 120.01963 * 14 2 1 16 16 C 1.50072 * 124.07465 * 180.44784 * 15 14 2 17 17 C 1.53026 * 110.14449 * 342.86958 * 16 15 14 18 18 C 1.53392 * 108.43765 * 49.43668 * 17 16 15 19 19 C 1.50062 * 117.96422 * 300.00053 * 14 2 1 20 20 H 1.09004 * 109.47412 * 299.99805 * 1 2 3 21 21 H 1.08999 * 109.47414 * 59.99727 * 1 2 3 22 22 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47288 * 179.97438 * 5 2 1 24 24 H 1.08997 * 109.47145 * 300.00375 * 5 2 1 25 25 H 0.97006 * 119.99763 * 180.02562 * 9 8 6 26 26 H 1.07997 * 117.96344 * 0.47138 * 15 14 2 27 27 H 1.09000 * 109.35750 * 222.66210 * 16 15 14 28 28 H 1.09002 * 109.35438 * 103.07648 * 16 15 14 29 29 H 1.09003 * 109.63872 * 169.11991 * 17 16 15 30 30 H 1.08996 * 109.64028 * 289.74986 * 17 16 15 31 31 H 1.08999 * 109.64670 * 52.25204 * 18 17 16 32 32 H 1.09002 * 109.63753 * 172.88020 * 18 17 16 33 33 H 1.09002 * 109.35957 * 42.68033 * 19 14 2 34 34 H 1.08998 * 109.36039 * 283.09675 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3993 2.4588 0.0011 5 6 2.0399 -0.7212 -1.2493 6 6 1.5376 -0.0108 -2.4797 7 1 0.9170 0.8676 -2.3806 8 6 1.8710 -0.4814 -3.7320 9 7 1.4330 0.1389 -4.8058 10 14 2.9449 -2.0002 -3.9035 11 1 2.0863 -3.2110 -3.9495 12 1 3.7372 -1.9074 -5.1561 13 1 3.8650 -2.0897 -2.7413 14 6 2.0323 -0.7104 1.2304 15 6 2.7739 -1.7585 1.0658 16 6 3.3388 -2.5741 2.1918 17 6 3.2828 -1.7791 3.4981 18 6 1.8676 -1.2097 3.6592 19 6 1.6421 -0.1586 2.5702 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1299 -0.7209 -1.2495 24 1 1.6765 -1.7488 -1.2493 25 1 1.6673 -0.1925 -5.6869 26 1 3.0005 -2.0649 0.0553 27 1 4.3746 -2.8298 1.9685 28 1 2.7582 -3.4902 2.3010 29 1 3.5109 -2.4366 4.3371 30 1 4.0042 -0.9630 3.4615 31 1 1.1360 -2.0106 3.5526 32 1 1.7685 -0.7470 4.6412 33 1 0.5892 0.1229 2.5523 34 1 2.2458 0.7224 2.7879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075578819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = 0.991904 kcal Electronic energy + Delta-G solvation = -14887.732777 eV Core-core repulsion = 12591.285591 eV Total energy + Delta-G solvation = -2296.447186 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60809 -37.75480 -35.98297 -34.38626 -31.80572 -30.91808 -29.35305 -26.02560 -24.17393 -23.40589 -22.07208 -19.41420 -18.71489 -17.43347 -16.54792 -16.10767 -15.39746 -15.29253 -14.65116 -14.58839 -14.43361 -14.32605 -13.82473 -13.70106 -13.37647 -13.17544 -13.01772 -12.82945 -12.61865 -12.42948 -12.21190 -11.82541 -11.64484 -11.52759 -11.37570 -11.02077 -10.76474 -10.73421 -9.67397 -8.26233 -6.31011 1.29682 1.38132 1.40986 1.50813 1.90792 1.95453 2.37967 3.09166 3.22396 3.72936 3.89560 4.15782 4.27111 4.30701 4.37327 4.58052 4.60432 4.77782 4.82265 4.96066 4.99736 5.07997 5.10218 5.15458 5.20623 5.27171 5.30240 5.38232 5.44657 5.57649 5.66167 5.80910 6.18551 6.25964 6.70124 6.77107 7.32684 8.90255 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.030559 B = 0.009659 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.046199 B = 2898.052569 C = 3443.230126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.075 3.925 3 C 0.259 3.741 4 N -0.507 5.507 5 C 0.002 3.998 6 C -0.524 4.524 7 H 0.035 0.965 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.941 3.059 11 H -0.256 1.256 12 H -0.293 1.293 13 H -0.241 1.241 14 C -0.122 4.122 15 C -0.151 4.151 16 C -0.087 4.087 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.085 4.085 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.089 0.911 23 H 0.023 0.977 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -9.863 17.399 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 C -0.057 4.057 4 N -0.183 5.183 5 C -0.036 4.036 6 C -0.562 4.562 7 H 0.053 0.947 8 C -0.191 4.191 9 N -0.592 5.592 10 Si 0.764 3.236 11 H -0.180 1.180 12 H -0.219 1.219 13 H -0.164 1.164 14 C -0.123 4.123 15 C -0.169 4.169 16 C -0.124 4.124 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.122 4.122 20 H 0.092 0.908 21 H 0.064 0.936 22 H 0.108 0.892 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.858 -8.225 17.223 19.176 hybrid contribution 0.221 -0.231 -1.271 1.311 sum 2.080 -8.456 15.951 18.173 Atomic orbital electron populations 1.21754 0.90321 1.04155 1.01832 1.17518 0.97609 0.81703 0.96000 1.29535 0.91451 0.94812 0.89906 1.80994 1.11291 1.14098 1.11918 1.19733 0.96413 0.96786 0.90650 1.21359 1.31453 1.12457 0.90953 0.94715 1.25971 0.97189 1.00573 0.95381 1.70079 1.47685 1.42785 0.98673 0.85790 0.79724 0.79737 0.78325 1.18012 1.21931 1.16412 1.20538 1.00733 0.97499 0.93558 1.22507 0.96767 0.96602 1.00981 1.20513 1.01260 0.98216 0.92383 1.21642 0.97051 0.99710 0.97446 1.21575 0.97478 0.98128 0.97685 1.20454 1.01896 0.98489 0.91367 0.90830 0.93559 0.89211 0.95909 0.92443 0.92651 0.87498 0.90390 0.89060 0.89692 0.92990 0.90583 0.90379 0.90015 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 7.94 71.98 0.57 -3.50 16 2 C 0.08 2.78 0.56 -54.74 -0.03 2.75 16 3 C 0.26 11.23 12.48 89.44 1.12 12.34 16 4 N -0.51 -23.93 18.54 20.00 0.37 -23.55 16 5 C 0.00 0.10 1.68 29.85 0.05 0.15 16 6 C -0.52 -28.90 8.35 25.60 0.21 -28.69 16 7 H 0.03 2.15 6.63 -2.91 -0.02 2.13 16 8 C 0.01 0.32 5.47 84.65 0.46 0.78 16 9 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 10 Si 0.94 42.31 27.47 68.60 1.88 44.19 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 14 C -0.12 -3.55 4.68 -15.10 -0.07 -3.62 16 15 C -0.15 -4.06 8.85 27.04 0.24 -3.82 16 16 C -0.09 -1.68 6.12 29.66 0.18 -1.50 16 17 C -0.12 -2.09 6.01 30.73 0.18 -1.91 16 18 C -0.11 -1.94 6.01 30.73 0.18 -1.76 16 19 C -0.09 -2.02 5.32 29.66 0.16 -1.86 16 20 H 0.07 2.01 6.74 -2.38 -0.02 2.00 16 21 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 22 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 23 H 0.02 1.00 6.43 -2.39 -0.02 0.99 16 24 H 0.06 2.26 6.82 -2.39 -0.02 2.25 16 25 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 26 H 0.11 3.22 5.12 -2.91 -0.01 3.20 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.79 6.53 -2.39 -0.02 1.78 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -67.74 272.48 6.84 -60.90 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.03 Total: 8.22 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.26 Total: -30.62 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: 0.67 Total: -82.69 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -67.74 6.84 -60.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075578819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.889 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds