Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31322 * 1 3 3 Si 1.86803 * 120.00299 * 2 1 4 4 H 1.48500 * 109.46954 * 269.99580 * 3 2 1 5 5 H 1.48493 * 109.46868 * 29.99833 * 3 2 1 6 6 H 1.48499 * 109.47152 * 149.99661 * 3 2 1 7 7 C 1.38946 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.37559 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.37300 * 126.51402 * 0.29502 * 9 7 2 11 11 C 1.34632 * 106.83326 * 180.15979 * 10 9 7 12 12 N 1.34250 * 108.27701 * 359.58800 * 11 10 9 13 13 C 1.30483 * 109.40304 * 0.26454 * 12 11 10 14 14 C 1.50695 * 125.74379 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47290 * 90.02541 * 14 13 12 16 16 F 1.39891 * 109.47030 * 60.00040 * 15 14 13 17 17 F 1.39899 * 109.47116 * 180.02562 * 15 14 13 18 18 F 1.39903 * 109.46554 * 299.99894 * 15 14 13 19 19 H 0.96999 * 119.99902 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.58217 * 0.02562 * 10 9 7 21 21 H 1.08002 * 125.86394 * 179.85603 * 11 10 9 22 22 H 1.09005 * 109.47380 * 210.02196 * 14 13 12 23 23 H 1.09001 * 109.47237 * 330.02523 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4949 2.0463 -1.4001 5 1 1.4448 2.6526 0.7000 6 1 3.5448 1.4401 0.7001 7 6 2.0079 -1.2033 0.0005 8 1 3.0879 -1.2033 0.0001 9 7 1.3201 -2.3946 0.0005 10 6 -0.0441 -2.5503 -0.0056 11 6 -0.2853 -3.8748 0.0005 12 7 0.8934 -4.5175 0.0010 13 6 1.8631 -3.6444 0.0011 14 6 3.3357 -3.9644 0.0021 15 6 3.8351 -4.0729 -1.4400 16 9 3.6225 -2.8578 -2.0998 17 9 5.2021 -4.3705 -1.4390 18 9 3.1373 -5.0903 -2.0998 19 1 -0.4850 0.8400 -0.0004 20 1 -0.7819 -1.7616 -0.0118 21 1 -1.2598 -4.3405 0.0003 22 1 3.8794 -3.1718 0.5162 23 1 3.5014 -4.9112 0.5162 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082738884.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = -106.475682 kcal Electronic energy + Delta-G solvation = -15252.311902 eV Core-core repulsion = 12072.255732 eV Total energy + Delta-G solvation = -3180.056170 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.45781 -47.02088 -46.85785 -40.43583 -34.10376 -32.03928 -30.85444 -26.88223 -25.29646 -22.99803 -20.34945 -19.27637 -18.16317 -17.80584 -17.54905 -16.51782 -15.47482 -14.46715 -13.95802 -13.88708 -13.58742 -13.39517 -13.13658 -13.06122 -13.00253 -12.67246 -11.97257 -11.89377 -11.60400 -11.46983 -11.24504 -10.88169 -10.66759 -9.81574 -8.58368 -8.46221 -6.98012 -6.81939 -4.60712 2.84973 2.96327 3.00826 3.22158 3.70491 3.72560 4.32352 4.54119 4.64717 4.67534 4.93622 5.05177 5.52864 5.82808 5.96619 6.64690 6.79181 6.93759 7.38036 7.49539 8.13944 8.35212 8.67371 9.28429 9.58921 10.12508 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.012835 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.361677 B = 2180.997098 C = 2897.540346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.329 4.329 8 H 0.111 0.889 9 N -0.249 5.249 10 C -0.048 4.048 11 C -0.096 4.096 12 N -0.495 5.495 13 C 0.062 3.938 14 C -0.047 4.047 15 C 0.450 3.550 16 F -0.177 7.177 17 F -0.197 7.197 18 F -0.179 7.179 19 H 0.281 0.719 20 H 0.196 0.804 21 H 0.145 0.855 22 H 0.109 0.891 23 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 -0.858 -0.316 5.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.459 4.459 8 H 0.129 0.871 9 N 0.085 4.915 10 C -0.192 4.192 11 C -0.250 4.250 12 N -0.217 5.217 13 C -0.191 4.191 14 C -0.087 4.087 15 C 0.395 3.605 16 F -0.158 7.158 17 F -0.178 7.178 18 F -0.161 7.161 19 H 0.092 0.908 20 H 0.213 0.787 21 H 0.163 0.837 22 H 0.127 0.873 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.521 -1.421 -0.338 5.711 hybrid contribution 0.192 1.649 -0.285 1.684 sum 5.712 0.228 -0.623 5.750 Atomic orbital electron populations 1.69709 1.06521 1.28793 1.41830 1.25559 0.95766 1.00891 0.94446 0.85608 0.79243 0.78939 0.79199 1.19384 1.19990 1.18692 1.20026 0.92869 0.81563 1.51453 0.87127 1.41598 1.05878 1.04901 1.39091 1.23699 0.85504 0.98381 1.11610 1.21845 0.95602 0.91558 1.15952 1.69735 0.98242 1.32803 1.20898 1.21520 0.93467 0.81826 1.22295 1.20603 0.91653 1.06193 0.90269 1.20853 0.74229 0.73870 0.91513 1.93214 1.94441 1.44743 1.83411 1.93123 1.34074 1.93445 1.97191 1.93177 1.78964 1.60537 1.83408 0.90792 0.78728 0.83720 0.87258 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.90 10.19 55.49 0.57 -20.33 14 2 C 0.04 1.05 5.48 -17.51 -0.10 0.95 14 3 Si 0.95 18.40 29.55 -169.99 -5.02 13.38 14 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 6 H -0.26 -4.95 7.11 56.52 0.40 -4.54 14 7 C -0.33 -8.30 9.69 -14.72 -0.14 -8.44 14 8 H 0.11 2.59 7.07 -52.49 -0.37 2.22 14 9 N -0.25 -6.52 2.93 -58.87 -0.17 -6.69 14 10 C -0.05 -1.24 10.40 -16.38 -0.17 -1.41 14 11 C -0.10 -2.38 11.85 -17.77 -0.21 -2.59 14 12 N -0.50 -12.59 11.24 -10.52 -0.12 -12.71 14 13 C 0.06 1.52 6.63 -154.30 -1.02 0.49 14 14 C -0.05 -0.91 5.51 -27.88 -0.15 -1.06 14 15 C 0.45 8.66 3.15 37.16 0.12 8.78 14 16 F -0.18 -3.77 16.79 2.25 0.04 -3.73 14 17 F -0.20 -3.33 17.32 2.25 0.04 -3.29 14 18 F -0.18 -3.71 17.02 2.25 0.04 -3.67 14 19 H 0.28 6.43 8.31 -40.82 -0.34 6.09 14 20 H 0.20 5.11 5.60 -52.49 -0.29 4.82 14 21 H 0.15 3.12 8.06 -52.49 -0.42 2.70 14 22 H 0.11 1.90 7.37 -51.93 -0.38 1.52 14 23 H 0.12 1.94 8.14 -51.93 -0.42 1.52 14 LS Contribution 223.62 15.07 3.37 3.37 Total: -1.00 -28.32 223.62 -3.97 -32.29 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -1.03 Total: 4.66 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.68 Total: -3.28 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.27 Total: -39.73 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 0.12 Total: -10.69 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.32 -3.97 -32.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738884.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.182 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds