Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31322 * 1 3 3 Si 1.86803 * 120.00299 * 2 1 4 4 H 1.48500 * 109.46954 * 269.99580 * 3 2 1 5 5 H 1.48493 * 109.46868 * 29.99833 * 3 2 1 6 6 H 1.48499 * 109.47152 * 149.99661 * 3 2 1 7 7 C 1.38946 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.37559 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.37300 * 126.51402 * 0.29502 * 9 7 2 11 11 C 1.34632 * 106.83326 * 180.15979 * 10 9 7 12 12 N 1.34250 * 108.27701 * 359.58800 * 11 10 9 13 13 C 1.30483 * 109.40304 * 0.26454 * 12 11 10 14 14 C 1.50695 * 125.74379 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47290 * 90.02541 * 14 13 12 16 16 F 1.39891 * 109.47030 * 60.00040 * 15 14 13 17 17 F 1.39899 * 109.47116 * 180.02562 * 15 14 13 18 18 F 1.39903 * 109.46554 * 299.99894 * 15 14 13 19 19 H 0.96999 * 119.99902 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.58217 * 0.02562 * 10 9 7 21 21 H 1.08002 * 125.86394 * 179.85603 * 11 10 9 22 22 H 1.09005 * 109.47380 * 210.02196 * 14 13 12 23 23 H 1.09001 * 109.47237 * 330.02523 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4949 2.0463 -1.4001 5 1 1.4448 2.6526 0.7000 6 1 3.5448 1.4401 0.7001 7 6 2.0079 -1.2033 0.0005 8 1 3.0879 -1.2033 0.0001 9 7 1.3201 -2.3946 0.0005 10 6 -0.0441 -2.5503 -0.0056 11 6 -0.2853 -3.8748 0.0005 12 7 0.8934 -4.5175 0.0010 13 6 1.8631 -3.6444 0.0011 14 6 3.3357 -3.9644 0.0021 15 6 3.8351 -4.0729 -1.4400 16 9 3.6225 -2.8578 -2.0998 17 9 5.2021 -4.3705 -1.4390 18 9 3.1373 -5.0903 -2.0998 19 1 -0.4850 0.8400 -0.0004 20 1 -0.7819 -1.7616 -0.0118 21 1 -1.2598 -4.3405 0.0003 22 1 3.8794 -3.1718 0.5162 23 1 3.5014 -4.9112 0.5162 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738884.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = -122.425416 kcal Electronic energy + Delta-G solvation = -15253.003535 eV Core-core repulsion = 12072.255732 eV Total energy + Delta-G solvation = -3180.747803 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.00114 -48.51611 -48.46985 -42.33175 -35.96267 -33.69611 -32.73581 -28.71678 -27.17190 -24.59700 -22.25882 -21.10437 -19.87934 -19.38225 -19.19073 -18.18118 -17.28014 -16.09024 -15.56982 -15.46042 -15.39490 -14.93912 -14.84746 -14.64027 -14.62608 -14.45839 -13.69777 -13.66669 -13.24612 -13.07412 -12.84383 -12.70661 -12.14011 -11.59728 -10.52793 -10.36184 -8.91315 -8.63902 -6.51794 1.23170 1.38384 1.54035 1.62488 2.00904 2.10197 2.50327 2.85928 2.89602 3.12558 3.20627 3.34632 3.89451 4.29185 4.45156 4.84169 4.93429 5.07487 5.44857 5.58541 6.25209 6.43841 6.79317 7.39891 7.66859 8.32595 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.012835 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.361677 B = 2180.997098 C = 2897.540346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.001 3.999 3 Si 1.017 2.983 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.249 1.249 7 C -0.357 4.357 8 H 0.124 0.876 9 N -0.263 5.263 10 C -0.078 4.078 11 C -0.102 4.102 12 N -0.515 5.515 13 C 0.057 3.943 14 C -0.047 4.047 15 C 0.457 3.543 16 F -0.191 7.191 17 F -0.179 7.179 18 F -0.189 7.189 19 H 0.287 0.713 20 H 0.188 0.812 21 H 0.169 0.831 22 H 0.129 0.871 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -0.301 -0.067 6.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.172 1.172 7 C -0.486 4.486 8 H 0.142 0.858 9 N 0.071 4.929 10 C -0.222 4.222 11 C -0.255 4.255 12 N -0.236 5.236 13 C -0.198 4.198 14 C -0.086 4.086 15 C 0.402 3.598 16 F -0.172 7.172 17 F -0.161 7.161 18 F -0.171 7.171 19 H 0.098 0.902 20 H 0.205 0.795 21 H 0.186 0.814 22 H 0.147 0.853 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.879 -0.885 -0.086 6.936 hybrid contribution -0.249 1.438 -0.369 1.505 sum 6.630 0.553 -0.456 6.668 Atomic orbital electron populations 1.69791 1.07973 1.30036 1.41791 1.26634 0.96589 1.04120 0.93282 0.84583 0.78394 0.74217 0.79201 1.19275 1.19398 1.17250 1.20525 0.93742 0.81835 1.52530 0.85797 1.41881 1.05977 1.05819 1.39178 1.23778 0.86058 0.98834 1.13552 1.22270 0.96688 0.91334 1.15218 1.69767 0.98673 1.33280 1.21912 1.22390 0.95433 0.81242 1.20691 1.20812 0.88781 1.08363 0.90683 1.20730 0.74858 0.73146 0.91071 1.93189 1.94622 1.45665 1.83736 1.93157 1.32568 1.93244 1.97090 1.93161 1.79372 1.60895 1.83650 0.90192 0.79527 0.81373 0.85280 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.20 10.19 21.66 0.22 -42.98 14 2 C 0.00 0.04 5.48 84.94 0.47 0.50 14 3 Si 1.02 36.38 29.55 68.60 2.03 38.41 14 4 H -0.27 -9.50 7.11 99.48 0.71 -8.79 14 5 H -0.27 -9.31 7.11 99.48 0.71 -8.61 14 6 H -0.25 -8.31 7.11 99.48 0.71 -7.61 14 7 C -0.36 -17.74 9.69 83.96 0.81 -16.92 14 8 H 0.12 5.61 7.07 -2.91 -0.02 5.59 14 9 N -0.26 -13.70 2.93 -340.17 -1.00 -14.70 14 10 C -0.08 -4.15 10.40 83.01 0.86 -3.28 14 11 C -0.10 -5.04 11.85 83.50 0.99 -4.05 14 12 N -0.51 -25.84 11.24 -187.20 -2.11 -27.94 14 13 C 0.06 2.71 6.63 137.74 0.91 3.62 14 14 C -0.05 -1.70 5.51 29.85 0.16 -1.54 14 15 C 0.46 16.69 3.15 71.98 0.23 16.92 14 16 F -0.19 -7.87 16.79 44.97 0.76 -7.12 14 17 F -0.18 -5.60 17.32 44.97 0.78 -4.82 14 18 F -0.19 -7.56 17.02 44.97 0.77 -6.79 14 19 H 0.29 13.10 8.31 -92.71 -0.77 12.33 14 20 H 0.19 10.06 5.60 -2.91 -0.02 10.04 14 21 H 0.17 7.20 8.06 -2.91 -0.02 7.18 14 22 H 0.13 4.16 7.37 -2.38 -0.02 4.14 14 23 H 0.14 4.38 8.14 -2.39 -0.02 4.36 14 Total: -1.00 -59.19 223.62 7.14 -52.05 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.25 Total: 18.64 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.44 Total: -4.76 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.88 Total: -85.62 kcal Atomic # 9 Polarization: -21.02 SS G_CDS: 2.30 Total: -18.72 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -59.19 7.14 -52.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738884.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.371 kcal (2) G-P(sol) polarization free energy of solvation -59.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds