Wall clock time and date at job start Mon Mar 30 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46792 * 2 1 4 4 N 1.46900 * 109.47208 * 174.80810 * 3 2 1 5 5 C 1.50699 * 109.47512 * 54.80544 * 3 2 1 6 6 H 1.07997 * 120.00376 * 239.99598 * 5 3 2 7 7 C 1.37879 * 119.99687 * 60.00072 * 5 3 2 8 8 N 1.31517 * 120.00059 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00190 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47246 * 90.00076 * 9 7 5 11 11 H 1.48499 * 109.46897 * 210.00246 * 9 7 5 12 12 H 1.48503 * 109.46781 * 329.99633 * 9 7 5 13 13 C 1.50700 * 109.47148 * 294.80805 * 3 2 1 14 14 C 1.38236 * 120.00178 * 83.70955 * 13 3 2 15 15 C 1.38229 * 120.00281 * 179.97438 * 14 13 3 16 16 C 1.38234 * 120.00226 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00327 * 179.71887 * 16 15 14 18 18 C 1.38244 * 119.99664 * 359.97438 * 16 15 14 19 19 C 1.38232 * 120.00141 * 263.68821 * 13 3 2 20 20 H 1.09003 * 109.46799 * 186.51171 * 1 2 3 21 21 H 1.08997 * 109.47618 * 306.51612 * 1 2 3 22 22 H 1.09008 * 109.47044 * 66.52092 * 1 2 3 23 23 H 1.08992 * 109.47438 * 240.00101 * 2 1 3 24 24 H 1.09001 * 109.46758 * 119.99443 * 2 1 3 25 25 H 1.00906 * 110.99818 * 56.04390 * 4 3 2 26 26 H 1.00897 * 111.00071 * 179.97438 * 4 3 2 27 27 H 0.97000 * 120.00471 * 180.02562 * 8 7 5 28 28 H 1.08003 * 119.99778 * 359.97438 * 14 13 3 29 29 H 1.08003 * 120.00139 * 179.97438 * 15 14 13 30 30 H 1.09004 * 109.46935 * 90.00137 * 17 16 15 31 31 H 1.09008 * 109.47253 * 209.99571 * 17 16 15 32 32 H 1.08990 * 109.47279 * 330.00000 * 17 16 15 33 33 H 1.07997 * 119.99415 * 179.97438 * 18 16 15 34 34 H 1.07997 * 120.00106 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5036 1.4445 0.1253 5 6 1.4353 2.1891 1.1611 6 1 0.8263 3.0630 0.9829 7 6 1.6598 1.7565 2.4508 8 7 2.4019 0.6926 2.6678 9 14 0.9098 2.6815 3.8901 10 1 -0.4285 2.1167 4.1982 11 1 1.7900 2.5456 5.0784 12 1 0.7720 4.1175 3.5378 13 6 1.6453 2.1148 -1.2897 14 6 0.3874 2.6727 -1.4217 15 6 0.0256 3.2898 -2.6044 16 6 0.9218 3.3496 -3.6552 17 6 0.5252 4.0168 -4.9469 18 6 2.1802 2.7926 -3.5229 19 6 2.5413 2.1740 -2.3406 20 1 -0.3633 -1.0211 0.1165 21 1 -0.3634 0.6115 0.8259 22 1 -0.3633 0.4095 -0.9426 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.9299 0.8955 -0.6061 26 1 3.8650 2.3865 0.1273 27 1 2.5596 0.3880 3.5752 28 1 -0.3127 2.6263 -0.6006 29 1 -0.9573 3.7253 -2.7077 30 1 0.7849 5.0746 -4.9041 31 1 1.0535 3.5462 -5.7762 32 1 -0.5496 3.9123 -5.0947 33 1 2.8802 2.8390 -4.3440 34 1 3.5243 1.7389 -2.2373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084348454.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:21 Heat of formation + Delta-G solvation = 17.821099 kcal Electronic energy + Delta-G solvation = -15127.274147 eV Core-core repulsion = 12831.556730 eV Total energy + Delta-G solvation = -2295.717417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.06879 -35.92148 -32.11446 -30.88006 -30.77495 -29.62787 -26.54478 -25.30023 -22.97994 -21.83751 -20.76526 -18.91422 -16.17844 -15.70835 -14.55691 -14.47423 -14.28692 -13.83924 -13.40881 -13.12153 -13.02129 -12.81430 -12.21931 -11.99422 -11.80722 -11.29639 -11.04297 -10.85776 -10.57597 -10.49889 -10.24996 -10.02501 -9.70710 -9.38299 -8.86642 -8.37743 -8.22811 -7.68010 -7.04802 -5.82116 -3.97666 2.05651 2.10060 3.33114 3.41156 3.43813 4.43316 4.52848 5.30196 5.33433 5.38589 5.59347 5.69964 5.79011 5.92404 6.04554 6.08756 6.21790 6.37055 6.50424 6.57214 6.70486 6.79175 6.85147 7.08654 7.15427 7.20003 7.35883 7.42837 7.56019 7.72720 7.86789 8.06058 8.34381 8.70291 9.02750 9.17594 9.69182 11.17780 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.036050 B = 0.009265 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.515397 B = 3021.406580 C = 3221.403855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C 0.278 3.722 4 N -0.807 5.807 5 C -0.520 4.520 6 H 0.055 0.945 7 C 0.087 3.913 8 N -0.843 5.843 9 Si 0.877 3.123 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C -0.070 4.070 14 C -0.098 4.098 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.105 4.105 18 C -0.126 4.126 19 C -0.139 4.139 20 H 0.024 0.976 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.010 0.990 24 H 0.099 0.901 25 H 0.296 0.704 26 H 0.320 0.680 27 H 0.254 0.746 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 2.680 -9.551 10.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C 0.187 3.813 4 N -0.333 5.333 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.119 4.119 8 N -0.478 5.478 9 Si 0.705 3.295 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.073 4.073 14 C -0.116 4.116 15 C -0.148 4.148 16 C -0.119 4.119 17 C -0.162 4.162 18 C -0.144 4.144 19 C -0.157 4.157 20 H 0.043 0.957 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.028 0.972 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.132 0.868 27 H 0.064 0.936 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.359 2.183 -8.677 9.253 hybrid contribution -0.353 1.031 -0.159 1.101 sum -2.712 3.213 -8.836 9.785 Atomic orbital electron populations 1.21724 0.97643 0.98846 1.00999 1.21369 0.94300 0.97321 1.00374 1.17531 0.85063 0.91862 0.86832 1.59154 1.06439 1.16147 1.51576 1.20832 1.32225 1.12830 0.89942 0.92655 1.24881 0.94250 0.94610 0.98207 1.70022 1.35506 1.22521 1.19709 0.86863 0.79097 0.80560 0.82968 1.20836 1.21353 1.20119 1.21673 0.93175 0.94852 0.97556 1.21248 0.97162 0.96641 0.96588 1.21021 0.98780 1.01112 0.93922 1.19680 0.94804 1.01463 0.95964 1.20674 1.01099 0.99774 0.94627 1.20813 0.95816 1.00158 0.97605 1.21036 0.99883 1.01207 0.93578 0.95726 0.91237 0.94920 0.97160 0.88294 0.89231 0.86807 0.93599 0.85356 0.87316 0.92096 0.92360 0.92262 0.87478 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.75 37.16 0.33 -2.57 16 2 C -0.10 -2.23 4.95 -26.73 -0.13 -2.36 16 3 C 0.28 6.50 0.52 -133.91 -0.07 6.44 16 4 N -0.81 -18.48 7.67 -1.14 -0.01 -18.49 16 5 C -0.52 -13.40 5.90 -34.44 -0.20 -13.60 16 6 H 0.06 1.45 6.43 -52.49 -0.34 1.11 16 7 C 0.09 2.30 5.21 -17.82 -0.09 2.21 16 8 N -0.84 -23.16 10.86 55.43 0.60 -22.56 16 9 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C -0.07 -1.48 4.52 -104.63 -0.47 -1.95 16 14 C -0.10 -1.97 6.96 -39.59 -0.28 -2.24 16 15 C -0.13 -2.27 9.70 -39.59 -0.38 -2.66 16 16 C -0.12 -1.94 5.88 -104.62 -0.62 -2.56 16 17 C -0.10 -1.30 10.01 36.00 0.36 -0.94 16 18 C -0.13 -2.12 9.70 -39.58 -0.38 -2.50 16 19 C -0.14 -2.62 9.25 -39.59 -0.37 -2.99 16 20 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.07 1.60 6.81 -51.93 -0.35 1.24 16 22 H 0.03 0.65 6.37 -51.92 -0.33 0.32 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.10 2.60 6.23 -51.93 -0.32 2.27 16 25 H 0.30 6.12 7.42 -39.29 -0.29 5.83 16 26 H 0.32 7.20 8.95 -39.29 -0.35 6.85 16 27 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.13 2.66 6.35 -52.48 -0.33 2.32 16 29 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.65 8.08 -51.92 -0.42 0.23 16 32 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 1.96 6.38 -52.49 -0.33 1.63 16 LS Contribution 270.69 15.07 4.08 4.08 Total: -1.00 -27.46 270.69 -7.40 -34.87 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -4.74 Total: 12.11 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -2.31 Total: -25.73 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.59 Total: -41.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.46 -7.40 -34.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348454.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.686 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds