Wall clock time and date at job start Mon Mar 30 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46792 * 2 1 4 4 N 1.46900 * 109.47208 * 174.80810 * 3 2 1 5 5 C 1.50699 * 109.47512 * 54.80544 * 3 2 1 6 6 H 1.07997 * 120.00376 * 239.99598 * 5 3 2 7 7 C 1.37879 * 119.99687 * 60.00072 * 5 3 2 8 8 N 1.31517 * 120.00059 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00190 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47246 * 90.00076 * 9 7 5 11 11 H 1.48499 * 109.46897 * 210.00246 * 9 7 5 12 12 H 1.48503 * 109.46781 * 329.99633 * 9 7 5 13 13 C 1.50700 * 109.47148 * 294.80805 * 3 2 1 14 14 C 1.38236 * 120.00178 * 83.70955 * 13 3 2 15 15 C 1.38229 * 120.00281 * 179.97438 * 14 13 3 16 16 C 1.38234 * 120.00226 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00327 * 179.71887 * 16 15 14 18 18 C 1.38244 * 119.99664 * 359.97438 * 16 15 14 19 19 C 1.38232 * 120.00141 * 263.68821 * 13 3 2 20 20 H 1.09003 * 109.46799 * 186.51171 * 1 2 3 21 21 H 1.08997 * 109.47618 * 306.51612 * 1 2 3 22 22 H 1.09008 * 109.47044 * 66.52092 * 1 2 3 23 23 H 1.08992 * 109.47438 * 240.00101 * 2 1 3 24 24 H 1.09001 * 109.46758 * 119.99443 * 2 1 3 25 25 H 1.00906 * 110.99818 * 56.04390 * 4 3 2 26 26 H 1.00897 * 111.00071 * 179.97438 * 4 3 2 27 27 H 0.97000 * 120.00471 * 180.02562 * 8 7 5 28 28 H 1.08003 * 119.99778 * 359.97438 * 14 13 3 29 29 H 1.08003 * 120.00139 * 179.97438 * 15 14 13 30 30 H 1.09004 * 109.46935 * 90.00137 * 17 16 15 31 31 H 1.09008 * 109.47253 * 209.99571 * 17 16 15 32 32 H 1.08990 * 109.47279 * 330.00000 * 17 16 15 33 33 H 1.07997 * 119.99415 * 179.97438 * 18 16 15 34 34 H 1.07997 * 120.00106 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5036 1.4445 0.1253 5 6 1.4353 2.1891 1.1611 6 1 0.8263 3.0630 0.9829 7 6 1.6598 1.7565 2.4508 8 7 2.4019 0.6926 2.6678 9 14 0.9098 2.6815 3.8901 10 1 -0.4285 2.1167 4.1982 11 1 1.7900 2.5456 5.0784 12 1 0.7720 4.1175 3.5378 13 6 1.6453 2.1148 -1.2897 14 6 0.3874 2.6727 -1.4217 15 6 0.0256 3.2898 -2.6044 16 6 0.9218 3.3496 -3.6552 17 6 0.5252 4.0168 -4.9469 18 6 2.1802 2.7926 -3.5229 19 6 2.5413 2.1740 -2.3406 20 1 -0.3633 -1.0211 0.1165 21 1 -0.3634 0.6115 0.8259 22 1 -0.3633 0.4095 -0.9426 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.9299 0.8955 -0.6061 26 1 3.8650 2.3865 0.1273 27 1 2.5596 0.3880 3.5752 28 1 -0.3127 2.6263 -0.6006 29 1 -0.9573 3.7253 -2.7077 30 1 0.7849 5.0746 -4.9041 31 1 1.0535 3.5462 -5.7762 32 1 -0.5496 3.9123 -5.0947 33 1 2.8802 2.8390 -4.3440 34 1 3.5243 1.7389 -2.2373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084348454.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:21 Heat of formation + Delta-G solvation = 2.114241 kcal Electronic energy + Delta-G solvation = -15127.955248 eV Core-core repulsion = 12831.556730 eV Total energy + Delta-G solvation = -2296.398518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54616 -37.56594 -33.88998 -32.44619 -32.37363 -31.19991 -28.10244 -26.98222 -24.72809 -23.28501 -22.26510 -20.61857 -17.99887 -17.39674 -16.23342 -15.98617 -15.92801 -15.51419 -14.84682 -14.73171 -14.45637 -14.19411 -13.80430 -13.75794 -12.98332 -12.80133 -12.68180 -12.58874 -12.37438 -12.12411 -11.96720 -11.68187 -11.51214 -11.14350 -10.74899 -10.40000 -9.63819 -9.14731 -8.80412 -7.83071 -6.02649 0.65138 0.69746 1.42823 1.46667 1.52870 2.51163 3.05707 3.37030 4.10147 4.14012 4.26878 4.32352 4.40860 4.62888 4.70227 4.77291 4.87656 4.91084 4.99831 5.05048 5.08494 5.29118 5.33369 5.43837 5.55737 5.70380 5.73802 5.81557 5.84135 5.92877 6.10310 6.35246 6.45893 6.80839 7.18822 7.36247 7.66329 9.14539 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.036050 B = 0.009265 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.515397 B = 3021.406580 C = 3221.403855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C 0.276 3.724 4 N -0.818 5.818 5 C -0.521 4.521 6 H 0.045 0.955 7 C 0.046 3.954 8 N -0.868 5.868 9 Si 0.928 3.072 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.097 4.097 14 C -0.116 4.116 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.126 4.126 19 C -0.147 4.147 20 H 0.038 0.962 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.016 0.984 24 H 0.067 0.933 25 H 0.308 0.692 26 H 0.320 0.680 27 H 0.250 0.750 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 3.654 -11.662 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.131 4.131 3 C 0.185 3.815 4 N -0.345 5.345 5 C -0.559 4.559 6 H 0.063 0.937 7 C -0.158 4.158 8 N -0.504 5.504 9 Si 0.755 3.245 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.202 1.202 13 C -0.099 4.099 14 C -0.135 4.135 15 C -0.152 4.152 16 C -0.114 4.114 17 C -0.160 4.160 18 C -0.144 4.144 19 C -0.165 4.165 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.035 0.965 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.871 3.162 -10.795 11.609 hybrid contribution -0.206 0.762 0.389 0.880 sum -3.077 3.924 -10.406 11.539 Atomic orbital electron populations 1.21590 0.96441 0.99399 1.00723 1.21274 0.95386 0.97402 0.99002 1.17394 0.84993 0.91618 0.87532 1.59039 1.06615 1.16331 1.52482 1.21049 1.31582 1.12306 0.90991 0.93702 1.25425 0.94857 0.95322 1.00147 1.70154 1.36936 1.23676 1.19619 0.86062 0.78410 0.79441 0.80547 1.20497 1.21622 1.20183 1.21419 0.94409 0.96782 0.97298 1.21193 0.96745 0.98084 0.97461 1.21291 1.00208 1.00464 0.93212 1.20179 0.94084 0.99990 0.97108 1.20744 1.02280 1.00200 0.92740 1.21180 0.96715 0.98996 0.97513 1.21161 0.99770 1.01657 0.93927 0.94257 0.93262 0.93764 0.96500 0.91432 0.87946 0.86879 0.94075 0.87087 0.84981 0.90735 0.90631 0.90899 0.84458 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.75 71.98 0.63 -4.72 16 2 C -0.09 -4.36 4.95 30.59 0.15 -4.21 16 3 C 0.28 13.03 0.52 2.03 0.00 13.03 16 4 N -0.82 -37.84 7.67 -157.52 -1.21 -39.04 16 5 C -0.52 -27.31 5.90 25.60 0.15 -27.16 16 6 H 0.04 2.40 6.43 -2.91 -0.02 2.38 16 7 C 0.05 2.47 5.21 84.65 0.44 2.92 16 8 N -0.87 -48.72 10.86 21.45 0.23 -48.49 16 9 Si 0.93 43.29 29.54 68.60 2.03 45.32 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C -0.10 -4.04 4.52 -19.87 -0.09 -4.13 16 14 C -0.12 -4.61 6.96 22.27 0.16 -4.45 16 15 C -0.13 -4.37 9.70 22.27 0.22 -4.15 16 16 C -0.11 -3.30 5.88 -19.86 -0.12 -3.42 16 17 C -0.10 -2.07 10.01 71.24 0.71 -1.36 16 18 C -0.13 -3.86 9.70 22.27 0.22 -3.64 16 19 C -0.15 -5.33 9.25 22.27 0.21 -5.12 16 20 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.05 2.30 6.81 -2.39 -0.02 2.28 16 22 H 0.04 1.77 6.37 -2.38 -0.02 1.76 16 23 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 3.63 6.23 -2.39 -0.01 3.62 16 25 H 0.31 12.78 7.42 -89.69 -0.67 12.11 16 26 H 0.32 14.54 8.95 -89.70 -0.80 13.73 16 27 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.11 4.67 6.35 -2.91 -0.02 4.65 16 29 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.12 3.98 6.38 -2.91 -0.02 3.96 16 Total: -1.00 -58.62 270.69 3.36 -55.25 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.36 Total: 33.37 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 2.67 Total: -46.42 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -0.98 Total: -87.53 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -58.62 3.36 -55.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348454.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.369 kcal (2) G-P(sol) polarization free energy of solvation -58.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds