Wall clock time and date at job start Mon Mar 30 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46876 * 2 1 4 4 C 1.50698 * 109.47050 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99655 * 120.00713 * 4 2 1 6 6 C 1.37881 * 120.00167 * 300.00022 * 4 2 1 7 7 N 1.31509 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99949 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46872 * 90.00184 * 8 6 4 10 10 H 1.48499 * 109.47326 * 210.00004 * 8 6 4 11 11 H 1.48497 * 109.47300 * 330.00329 * 8 6 4 12 12 C 1.50696 * 109.47240 * 240.00380 * 2 1 3 13 13 C 1.38288 * 119.92554 * 120.00206 * 12 2 1 14 14 C 1.38100 * 120.07490 * 179.97438 * 13 12 2 15 15 C 1.38914 * 119.92399 * 359.97438 * 14 13 12 16 16 N 1.39675 * 120.07712 * 179.97438 * 15 14 13 17 17 C 1.46507 * 119.99622 * 0.02562 * 16 15 14 18 18 C 1.46498 * 120.00353 * 179.72315 * 16 15 14 19 19 C 1.38915 * 119.85317 * 0.25647 * 15 14 13 20 20 C 1.38104 * 119.92020 * 359.48918 * 19 15 14 21 21 H 1.08996 * 109.46958 * 59.99704 * 1 2 3 22 22 H 1.08996 * 109.46796 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47143 * 299.99845 * 1 2 3 24 24 H 0.97004 * 120.00203 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.96699 * 359.95344 * 13 12 2 26 26 H 1.07999 * 120.04149 * 179.97438 * 14 13 12 27 27 H 1.09001 * 109.47091 * 90.00293 * 17 16 15 28 28 H 1.09004 * 109.46622 * 209.99851 * 17 16 15 29 29 H 1.08997 * 109.47201 * 329.99553 * 17 16 15 30 30 H 1.09001 * 109.46777 * 60.00310 * 18 16 15 31 31 H 1.08996 * 109.47313 * 179.97438 * 18 16 15 32 32 H 1.08998 * 109.47521 * 300.00365 * 18 16 15 33 33 H 1.07991 * 120.04046 * 179.72622 * 19 15 14 34 34 H 1.07995 * 119.96395 * 180.25137 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5459 4.4123 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5662 3.7119 12 6 2.0324 -0.7103 -1.2305 13 6 2.8274 -0.0367 -2.1397 14 6 3.2899 -0.6848 -3.2680 15 6 2.9561 -2.0150 -3.4890 16 7 3.4216 -2.6734 -4.6294 17 6 4.2635 -1.9612 -5.5940 18 6 3.0736 -4.0781 -4.8577 19 6 2.1533 -2.6873 -2.5761 20 6 1.6986 -2.0347 -1.4471 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7081 1.1608 3.4844 25 1 3.0866 0.9975 -1.9673 26 1 3.9103 -0.1581 -3.9779 27 1 5.3116 -2.0810 -5.3195 28 1 4.0999 -2.3707 -6.5909 29 1 4.0053 -0.9023 -5.5893 30 1 1.9900 -4.1784 -4.9197 31 1 3.5234 -4.4168 -5.7910 32 1 3.4480 -4.6839 -4.0326 33 1 1.8883 -3.7201 -2.7471 34 1 1.0778 -2.5579 -0.7349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084348505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:09 Heat of formation + Delta-G solvation = 25.227346 kcal Electronic energy + Delta-G solvation = -14479.017118 eV Core-core repulsion = 12183.620860 eV Total energy + Delta-G solvation = -2295.396258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04076 -36.28420 -33.69846 -30.97306 -30.48188 -28.00985 -27.81449 -25.04688 -24.21964 -21.71132 -21.07477 -19.20718 -16.88568 -16.14268 -15.23598 -14.85454 -14.78046 -14.10999 -13.55311 -13.26883 -12.92323 -12.59688 -12.48183 -12.02278 -11.94098 -11.71877 -11.50169 -11.18134 -10.83927 -10.74857 -10.36118 -10.21637 -9.89757 -9.27347 -9.16136 -8.68675 -8.29034 -8.15312 -6.62437 -5.92253 -3.98638 2.19928 2.42499 3.34522 3.40901 3.44074 3.45039 4.47317 4.72083 5.07994 5.19084 5.36421 5.37814 5.56775 5.59186 5.68649 5.76673 5.79187 6.12188 6.20126 6.36956 6.48411 6.74619 6.86781 6.97599 7.07357 7.32744 7.39126 7.53717 7.59415 7.65775 7.82064 8.04320 8.12504 8.21122 8.52166 9.04512 9.65383 11.12727 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.044778 B = 0.006636 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.155083 B = 4218.389167 C = 4409.955742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.031 0.969 4 C -0.503 4.503 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.080 4.080 13 C -0.089 4.089 14 C -0.197 4.197 15 C 0.179 3.821 16 N -0.649 5.649 17 C 0.100 3.900 18 C 0.104 3.896 19 C -0.195 4.195 20 C -0.068 4.068 21 H 0.007 0.993 22 H 0.026 0.974 23 H 0.083 0.917 24 H 0.259 0.741 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -5.817 -13.204 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 H 0.049 0.951 4 C -0.541 4.541 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.081 4.081 13 C -0.107 4.107 14 C -0.219 4.219 15 C 0.082 3.918 16 N -0.364 5.364 17 C -0.043 4.043 18 C -0.040 4.040 19 C -0.217 4.217 20 C -0.086 4.086 21 H 0.026 0.974 22 H 0.045 0.955 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.511 -5.788 -13.207 14.841 hybrid contribution 0.414 -0.506 0.849 1.072 sum 3.925 -6.294 -12.358 14.413 Atomic orbital electron populations 1.21779 0.98003 0.99074 1.00010 1.17790 0.92586 0.95216 0.88749 0.95094 1.21182 1.30692 1.12192 0.90022 0.92568 1.24965 0.95180 0.95066 0.98871 1.69891 1.36923 1.23081 1.23211 0.86617 0.78547 0.80142 0.82842 1.20771 1.21307 1.19953 1.20447 0.96640 0.94164 0.96889 1.20882 0.97246 0.99277 0.93330 1.20530 1.07286 0.93541 1.00502 1.17642 0.95302 0.91757 0.87145 1.46103 1.56760 1.10720 1.22848 1.21516 0.93816 0.97622 0.91386 1.21443 0.99931 0.82038 1.00580 1.20580 1.04484 0.99694 0.96917 1.20836 0.98110 0.94546 0.95148 0.97390 0.95453 0.89870 0.93093 0.86859 0.87235 0.94214 0.92398 0.91566 0.93343 0.91715 0.93324 0.87333 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.78 37.16 0.33 -2.92 16 2 C 0.07 1.93 2.48 -92.93 -0.23 1.70 16 3 H 0.03 0.85 7.87 -51.93 -0.41 0.44 16 4 C -0.50 -14.00 8.24 -34.44 -0.28 -14.28 16 5 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.08 -1.80 4.74 -104.59 -0.50 -2.30 16 13 C -0.09 -1.80 9.66 -39.61 -0.38 -2.18 16 14 C -0.20 -3.51 9.21 -39.38 -0.36 -3.87 16 15 C 0.18 3.13 6.55 -83.78 -0.55 2.58 16 16 N -0.65 -9.13 3.41 -187.54 -0.64 -9.77 16 17 C 0.10 1.10 10.16 59.85 0.61 1.71 16 18 C 0.10 1.16 9.40 59.85 0.56 1.72 16 19 C -0.19 -3.56 9.31 -39.38 -0.37 -3.93 16 20 C -0.07 -1.42 8.69 -39.61 -0.34 -1.77 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.03 0.64 7.38 -51.93 -0.38 0.26 16 23 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.11 2.17 7.94 -52.49 -0.42 1.75 16 26 H 0.11 1.67 6.14 -52.49 -0.32 1.35 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 29 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 30 H 0.05 0.53 7.93 -51.93 -0.41 0.12 16 31 H 0.06 0.55 7.80 -51.93 -0.40 0.15 16 32 H 0.05 0.55 7.97 -51.93 -0.41 0.14 16 33 H 0.11 1.74 6.73 -52.49 -0.35 1.38 16 34 H 0.12 2.52 7.57 -52.49 -0.40 2.13 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -29.89 277.83 -7.40 -37.29 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.94 Total: -1.24 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -1.61 Total: -21.95 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.01 Total: -34.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.89 -7.40 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.520 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds