Wall clock time and date at job start Mon Mar 30 2020 02:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46517 * 2 1 4 4 C 1.50697 * 109.46823 * 239.99847 * 2 1 3 5 5 H 1.07997 * 119.99771 * 239.99311 * 4 2 1 6 6 C 1.37876 * 120.00211 * 60.00493 * 4 2 1 7 7 N 1.31519 * 119.99955 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00012 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47741 * 59.99147 * 8 6 4 10 10 H 1.48500 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46922 * 299.99075 * 8 6 4 12 12 C 1.50700 * 109.47250 * 119.99770 * 2 1 3 13 13 C 1.38279 * 119.92414 * 240.00253 * 12 2 1 14 14 C 1.38104 * 120.07648 * 179.97438 * 13 12 2 15 15 C 1.38915 * 119.92273 * 359.97438 * 14 13 12 16 16 N 1.39670 * 120.07504 * 180.02562 * 15 14 13 17 17 C 1.46499 * 120.00271 * 354.28324 * 16 15 14 18 18 C 1.46502 * 120.00165 * 174.28422 * 16 15 14 19 19 C 1.38910 * 119.84887 * 0.02562 * 15 14 13 20 20 C 1.38096 * 119.92589 * 0.02562 * 19 15 14 21 21 H 1.08998 * 109.47187 * 60.00520 * 1 2 3 22 22 H 1.09009 * 109.47069 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47207 * 299.99687 * 1 2 3 24 24 H 0.96995 * 119.99865 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.96687 * 0.02562 * 13 12 2 26 26 H 1.07999 * 120.04244 * 179.72698 * 14 13 12 27 27 H 1.08997 * 109.47357 * 89.99719 * 17 16 15 28 28 H 1.09000 * 109.47368 * 210.00504 * 17 16 15 29 29 H 1.09007 * 109.47130 * 330.00223 * 17 16 15 30 30 H 1.09001 * 109.47231 * 5.05880 * 18 16 15 31 31 H 1.09006 * 109.47245 * 125.05008 * 18 16 15 32 32 H 1.08994 * 109.47396 * 245.05329 * 18 16 15 33 33 H 1.08006 * 120.03872 * 179.97438 * 19 15 14 34 34 H 1.08007 * 119.96419 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8282 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0324 -0.7104 1.2305 13 6 2.8273 -0.0368 2.1397 14 6 3.2889 -0.6845 3.2686 15 6 2.9535 -2.0142 3.4906 16 7 3.4182 -2.6722 4.6315 17 6 4.3606 -2.0021 5.5309 18 6 2.9632 -4.0327 4.9289 19 6 2.1548 -2.6878 2.5752 20 6 1.6975 -2.0343 1.4478 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7083 1.1609 -3.4844 25 1 3.0867 0.9973 1.9672 26 1 3.9133 -0.1592 3.9761 27 1 3.8077 -1.4546 6.2942 28 1 4.9991 -2.7457 6.0078 29 1 4.9764 -1.3071 4.9598 30 1 2.3429 -4.3957 4.1094 31 1 3.8270 -4.6868 5.0479 32 1 2.3814 -4.0279 5.8505 33 1 1.8925 -3.7217 2.7445 34 1 1.0768 -2.5576 0.7355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084348509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:11 Heat of formation + Delta-G solvation = 12.850626 kcal Electronic energy + Delta-G solvation = -14480.921359 eV Core-core repulsion = 12184.988406 eV Total energy + Delta-G solvation = -2295.932953 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47892 -37.68617 -35.51412 -32.85803 -31.93671 -29.46969 -28.88627 -27.16690 -25.55248 -23.24643 -22.64613 -20.82206 -18.32330 -18.10155 -16.71866 -16.50734 -15.84621 -15.69489 -15.07653 -14.86216 -14.37471 -14.23780 -13.59395 -13.43294 -13.28428 -13.11291 -12.78591 -12.76315 -12.71449 -12.61706 -12.19851 -12.11099 -11.51881 -11.14773 -10.99146 -10.43124 -10.29225 -9.65478 -8.11219 -7.87438 -6.18960 0.69544 0.90844 1.42721 1.44022 1.51952 2.38573 2.45673 3.15276 3.23371 4.02386 4.14659 4.34305 4.46083 4.57179 4.58894 4.72903 4.79610 4.83753 4.88741 4.94727 5.01182 5.02465 5.13932 5.31526 5.36774 5.45642 5.59720 5.75079 5.78836 6.07361 6.15717 6.25043 6.46240 6.51626 6.72288 6.90086 7.48381 8.98873 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.044774 B = 0.006622 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.217348 B = 4227.392713 C = 4402.066141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.076 3.924 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.116 4.116 13 C -0.097 4.097 14 C -0.196 4.196 15 C 0.189 3.811 16 N -0.650 5.650 17 C 0.094 3.906 18 C 0.088 3.912 19 C -0.201 4.201 20 C -0.078 4.078 21 H 0.057 0.943 22 H 0.030 0.970 23 H 0.021 0.979 24 H 0.261 0.739 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -7.551 14.591 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.200 1.200 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.218 4.218 15 C 0.089 3.911 16 N -0.364 5.364 17 C -0.049 4.049 18 C -0.055 4.055 19 C -0.223 4.223 20 C -0.096 4.096 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.131 0.869 26 H 0.154 0.846 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.156 0.844 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.673 -7.537 14.629 17.107 hybrid contribution 0.114 -0.029 -1.179 1.185 sum 4.787 -7.566 13.450 16.157 Atomic orbital electron populations 1.21618 0.97806 0.98977 0.99349 1.17637 0.92840 0.93636 0.90109 0.98280 1.21413 1.30781 1.12149 0.91342 0.93305 1.25737 0.95380 0.95768 1.01759 1.70016 1.37763 1.24162 1.23933 0.85683 0.78672 0.78872 0.78862 1.19568 1.20771 1.19959 1.20192 0.99511 0.95228 0.96802 1.20951 0.97200 0.99479 0.93964 1.20734 1.07001 0.93899 1.00215 1.17810 0.94171 0.91548 0.87608 1.46412 1.49997 1.16152 1.23814 1.21681 0.92057 0.98223 0.92943 1.21782 1.00284 0.81858 1.01539 1.20848 1.04817 1.00732 0.95919 1.20772 0.98590 0.94021 0.96241 0.92416 0.95127 0.95953 0.93003 0.86893 0.84561 0.93167 0.89781 0.91827 0.90812 0.91411 0.92142 0.84420 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.78 71.98 0.63 -5.50 16 2 C 0.08 4.07 2.48 -12.29 -0.03 4.04 16 3 H 0.00 -0.06 7.87 -2.39 -0.02 -0.07 16 4 C -0.52 -29.66 8.24 25.60 0.21 -29.45 16 5 H 0.05 2.79 7.60 -2.91 -0.02 2.76 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 C -0.12 -5.31 4.74 -19.84 -0.09 -5.40 16 13 C -0.10 -3.94 9.66 22.25 0.21 -3.73 16 14 C -0.20 -6.64 9.16 22.40 0.21 -6.44 16 15 C 0.19 6.09 6.54 38.22 0.25 6.34 16 16 N -0.65 -15.91 3.41 -747.27 -2.55 -18.46 16 17 C 0.09 1.71 10.10 127.77 1.29 3.00 16 18 C 0.09 1.62 10.62 127.77 1.36 2.98 16 19 C -0.20 -6.94 9.31 22.40 0.21 -6.74 16 20 C -0.08 -3.24 8.70 22.25 0.19 -3.04 16 21 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 22 H 0.03 1.48 7.38 -2.38 -0.02 1.46 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.11 4.43 7.94 -2.91 -0.02 4.41 16 26 H 0.14 3.79 6.30 -2.91 -0.02 3.77 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 29 H 0.06 1.20 6.45 -2.38 -0.02 1.19 16 30 H 0.07 1.42 5.31 -2.39 -0.01 1.40 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.14 3.93 5.74 -2.91 -0.02 3.92 16 34 H 0.11 4.64 7.57 -2.91 -0.02 4.62 16 Total: -1.00 -64.60 276.41 5.68 -58.92 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.07 Total: 9.73 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.89 Total: -42.83 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.30 Total: -72.54 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.60 5.68 -58.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.770 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds