Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31031 * 1 3 3 Si 1.86807 * 120.00225 * 2 1 4 4 H 1.48496 * 109.46935 * 85.01510 * 3 2 1 5 5 H 1.48501 * 109.47013 * 205.01341 * 3 2 1 6 6 H 1.48496 * 109.47003 * 325.01021 * 3 2 1 7 7 C 1.39690 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00085 * 171.37024 * 7 2 1 9 9 C 1.41509 * 119.99989 * 351.37447 * 7 2 1 10 10 C 1.46436 * 126.91321 * 350.43559 * 9 7 2 11 11 N 1.30453 * 107.26013 * 179.81754 * 10 9 7 12 12 N 1.39714 * 109.54679 * 0.45013 * 11 10 9 13 13 C 1.39610 * 125.19333 * 179.67735 * 12 11 10 14 14 C 1.34207 * 125.24050 * 359.75170 * 13 12 11 15 15 C 1.38298 * 114.76516 * 179.79237 * 14 13 12 16 16 C 1.33442 * 114.99349 * 0.49744 * 15 14 13 17 17 S 1.75865 * 109.71483 * 359.73220 * 16 15 14 18 18 C 1.34550 * 109.61411 * 359.70357 * 12 11 10 19 19 H 0.97010 * 119.99852 * 0.02562 * 1 2 3 20 20 H 1.07999 * 126.37000 * 0.02562 * 10 9 7 21 21 H 1.08001 * 122.61792 * 359.96974 * 14 13 12 22 22 H 1.07997 * 122.50440 * 180.22832 * 15 14 13 23 23 H 1.07996 * 125.14348 * 179.69680 * 16 15 14 24 24 H 1.08000 * 126.29684 * 180.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 2.3865 2.1072 1.3948 5 1 3.5907 1.4120 -0.5920 6 1 1.4986 2.6199 -0.8028 7 6 2.0087 -1.2098 0.0005 8 1 3.0796 -1.2152 -0.1398 9 6 1.3132 -2.4282 0.1849 10 6 -0.0881 -2.5903 0.5781 11 7 -0.3299 -3.8711 0.6299 12 7 0.8296 -4.5793 0.3045 13 6 0.9385 -5.9706 0.2657 14 6 -0.0528 -6.8329 0.5397 15 6 0.2932 -8.1674 0.4297 16 6 1.5605 -8.3941 0.0787 17 16 2.3978 -6.8635 -0.1426 18 6 1.8255 -3.7158 0.0347 19 1 -0.4850 0.8401 -0.0004 20 1 -0.7915 -1.7969 0.7834 21 1 -1.0442 -6.5099 0.8211 22 1 -0.4085 -8.9663 0.6182 23 1 2.0050 -9.3700 -0.0495 24 1 2.8360 -3.9729 -0.2469 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084930436.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 102.504574 kcal Electronic energy + Delta-G solvation = -11849.515716 eV Core-core repulsion = 9663.131220 eV Total energy + Delta-G solvation = -2186.384495 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.57203 -37.02985 -33.83944 -31.64231 -29.42750 -27.58971 -24.98233 -23.34695 -20.57151 -20.05402 -18.44578 -17.57704 -16.44765 -15.20426 -14.97260 -14.22367 -14.11072 -13.18415 -12.95328 -12.16371 -12.13123 -11.92523 -11.54746 -11.36581 -11.16776 -10.84183 -10.39526 -10.28525 -9.64008 -9.18312 -9.10866 -8.12316 -7.90664 -7.04302 -6.80736 -4.24538 1.29356 1.69751 2.37791 2.83441 3.03520 3.07103 3.10874 3.69017 3.76114 3.92215 4.00829 5.25571 5.46210 5.56212 6.07006 6.18262 6.25536 6.61261 6.69816 6.91826 6.95209 7.17374 7.25372 7.72954 8.26355 8.29519 8.71213 8.80679 9.05757 10.20897 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.071450 B = 0.006800 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.790786 B = 4116.880506 C = 4486.519516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.428 4.428 8 H 0.079 0.921 9 C 0.014 3.986 10 C 0.073 3.927 11 N -0.317 5.317 12 N -0.310 5.310 13 C 0.128 3.872 14 C -0.228 4.228 15 C -0.089 4.089 16 C -0.270 4.270 17 S 0.100 5.900 18 C -0.178 4.178 19 H 0.281 0.719 20 H 0.205 0.795 21 H 0.141 0.859 22 H 0.134 0.866 23 H 0.159 0.841 24 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -7.159 0.237 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.145 4.145 3 Si 0.746 3.254 4 H -0.195 1.195 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.460 4.460 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.121 4.121 11 N -0.133 5.133 12 N -0.088 5.088 13 C -0.089 4.089 14 C -0.260 4.260 15 C -0.120 4.120 16 C -0.406 4.406 17 S 0.355 5.645 18 C -0.310 4.310 19 H 0.092 0.908 20 H 0.221 0.779 21 H 0.158 0.842 22 H 0.152 0.848 23 H 0.177 0.823 24 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.643 -7.423 0.042 7.880 hybrid contribution -0.440 0.979 0.168 1.086 sum 2.204 -6.444 0.209 6.814 Atomic orbital electron populations 1.69606 1.07424 1.29212 1.38985 1.25829 0.94919 1.01332 0.92391 0.86073 0.80153 0.80166 0.78967 1.19527 1.18710 1.20272 1.18863 0.95073 0.88946 1.43155 0.90252 1.19278 0.91390 0.91666 0.97174 1.26266 0.97760 0.91629 0.96442 1.76709 1.06050 1.06966 1.23547 1.43857 1.08616 1.00209 1.56130 1.21747 0.97794 0.85152 1.04256 1.19745 1.00879 0.91570 1.13830 1.19763 0.95657 0.96092 1.00463 1.25142 0.98584 0.99972 1.16877 1.84112 1.11370 0.97196 1.71815 1.21991 0.94382 0.89373 1.25304 0.90796 0.77894 0.84151 0.84779 0.82338 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.37 10.65 55.54 0.59 -19.78 14 2 C 0.07 1.70 5.46 -17.35 -0.09 1.60 14 3 Si 0.92 18.31 29.57 -169.99 -5.03 13.28 14 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 14 5 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.28 -5.42 7.11 56.52 0.40 -5.01 14 7 C -0.43 -11.10 9.40 -37.79 -0.36 -11.46 14 8 H 0.08 1.97 7.86 -52.49 -0.41 1.56 14 9 C 0.01 0.37 6.03 -104.92 -0.63 -0.26 14 10 C 0.07 1.90 11.07 -14.84 -0.16 1.73 14 11 N -0.32 -8.09 12.16 32.02 0.39 -7.70 14 12 N -0.31 -7.60 3.73 -10.82 -0.04 -7.64 14 13 C 0.13 2.71 7.24 -15.42 -0.11 2.60 14 14 C -0.23 -4.36 9.92 -40.98 -0.41 -4.76 14 15 C -0.09 -1.37 10.17 -41.24 -0.42 -1.79 14 16 C -0.27 -3.94 11.22 29.06 0.33 -3.62 14 17 S 0.10 1.70 22.73 -107.50 -2.44 -0.75 14 18 C -0.18 -4.46 11.08 -15.93 -0.18 -4.63 14 19 H 0.28 6.33 8.30 -40.82 -0.34 5.99 14 20 H 0.20 5.15 6.26 -52.49 -0.33 4.82 14 21 H 0.14 2.72 8.06 -52.49 -0.42 2.30 14 22 H 0.13 1.65 8.06 -52.49 -0.42 1.22 14 23 H 0.16 1.80 8.06 -52.49 -0.42 1.38 14 24 H 0.15 3.38 7.91 -52.49 -0.42 2.97 14 LS Contribution 236.25 15.07 3.56 3.56 Total: -1.00 -27.52 236.25 -6.56 -34.08 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -1.56 Total: 5.53 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.03 Total: -20.59 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.94 Total: -35.12 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.44 Total: -0.75 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.52 -6.56 -34.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930436.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.587 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds