Wall clock time and date at job start Mon Mar 30 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31776 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47111 * 270.00056 * 3 2 1 5 5 H 1.48499 * 109.47607 * 30.00133 * 3 2 1 6 6 H 1.48505 * 109.47337 * 150.00227 * 3 2 1 7 7 C 1.38473 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99998 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.76202 * 99.99917 * 180.02562 * 9 7 2 11 11 C 1.34620 * 125.24269 * 179.71695 * 10 9 7 12 12 C 1.38162 * 114.71445 * 180.26092 * 11 10 9 13 13 C 1.33704 * 114.99350 * 0.02562 * 12 11 10 14 14 Cl 1.73599 * 125.12706 * 180.02562 * 13 12 11 15 15 S 1.75850 * 109.74740 * 359.97438 * 13 12 11 16 16 H 0.97007 * 119.99977 * 359.97438 * 1 2 3 17 17 H 1.08000 * 122.64191 * 0.25036 * 11 10 9 18 18 H 1.08004 * 122.50600 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3178 0.0000 0.0000 3 14 2.2517 1.6177 0.0000 4 1 2.4992 2.0464 -1.4001 5 1 1.4493 2.6527 0.7000 6 1 3.5494 1.4402 0.7000 7 6 2.0101 -1.1992 -0.0005 8 1 3.0901 -1.1992 -0.0010 9 16 1.1291 -2.7251 -0.0005 10 6 2.4789 -3.8577 -0.0005 11 6 2.3673 -5.1993 0.0049 12 6 3.5701 -5.8790 0.0094 13 6 4.6581 -5.1019 0.0082 14 17 6.2962 -5.6768 0.0123 15 16 4.1797 -3.4098 0.0003 16 1 -0.4850 0.8401 0.0004 17 1 1.4127 -5.7044 0.0059 18 1 3.6273 -6.9575 0.0135 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146631438.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:56 Heat of formation + Delta-G solvation = 9.335302 kcal Electronic energy + Delta-G solvation = -8446.753675 eV Core-core repulsion = 6528.523233 eV Total energy + Delta-G solvation = -1918.230442 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 219.948 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.05293 -35.89453 -32.89483 -28.54823 -26.03983 -23.40626 -19.62542 -17.79405 -17.30889 -15.20703 -15.07876 -14.16661 -13.19783 -13.16270 -12.54208 -12.24321 -11.42814 -11.39197 -11.19176 -11.09320 -10.81768 -10.19777 -10.02876 -9.57377 -8.89187 -8.61673 -7.88193 -6.67919 -6.67220 -4.38829 1.46386 1.79939 2.48604 2.84718 2.98993 3.04530 3.12016 3.24734 3.27811 3.90502 4.75720 4.96609 5.82199 6.03331 6.56008 6.73220 6.98307 7.24976 7.95366 8.80796 10.38758 Molecular weight = 219.95amu Principal moments of inertia in cm(-1) A = 0.049177 B = 0.008848 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.229422 B = 3163.840050 C = 3723.222262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.083 3.917 3 Si 0.927 3.073 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.559 4.559 8 H 0.090 0.910 9 S 0.133 5.867 10 C -0.164 4.164 11 C -0.196 4.196 12 C -0.082 4.082 13 C -0.209 4.209 14 Cl -0.050 7.050 15 S 0.153 5.847 16 H 0.278 0.722 17 H 0.137 0.863 18 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 -6.033 0.006 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.129 4.129 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.707 4.707 8 H 0.108 0.892 9 S 0.385 5.615 10 C -0.398 4.398 11 C -0.236 4.236 12 C -0.116 4.116 13 C -0.358 4.358 14 Cl -0.022 7.022 15 S 0.408 5.592 16 H 0.088 0.912 17 H 0.155 0.845 18 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.303 -4.603 0.006 7.023 hybrid contribution 1.246 -0.311 -0.003 1.285 sum 6.550 -4.915 0.002 8.189 Atomic orbital electron populations 1.70002 1.06074 1.28856 1.44447 1.25043 0.95212 0.99825 0.92800 0.85999 0.79713 0.80121 0.79033 1.19567 1.20227 1.18901 1.23170 0.95922 0.91320 1.60293 0.89209 1.83327 1.01543 0.94879 1.81715 1.27466 1.02063 1.02703 1.07542 1.19390 0.98203 0.91350 1.14644 1.19865 0.90418 1.00101 1.01208 1.25046 0.88420 0.98911 1.23413 1.98276 1.17946 1.88234 1.97722 1.84419 0.98430 1.01305 1.75032 0.91199 0.84523 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.22 13.22 55.47 0.73 -22.49 13 2 C 0.08 2.14 5.49 -17.49 -0.10 2.04 13 3 Si 0.93 19.91 29.55 -169.99 -5.02 14.89 13 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 13 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 13 6 H -0.26 -5.62 7.11 56.52 0.40 -5.21 13 7 C -0.56 -14.64 9.24 30.82 0.28 -14.35 13 8 H 0.09 2.29 5.91 -52.49 -0.31 1.98 13 9 S 0.13 3.24 21.81 -107.50 -2.34 0.90 13 10 C -0.16 -3.54 6.64 29.45 0.20 -3.34 13 11 C -0.20 -3.72 10.14 -40.89 -0.41 -4.14 13 12 C -0.08 -1.42 10.12 -41.20 -0.42 -1.84 13 13 C -0.21 -3.78 7.09 29.14 0.21 -3.58 13 14 Cl -0.05 -0.78 29.28 -51.86 -1.52 -2.30 13 15 S 0.15 3.10 21.03 -107.50 -2.26 0.84 13 16 H 0.28 6.95 8.32 -40.82 -0.34 6.61 13 17 H 0.14 2.33 8.06 -52.49 -0.42 1.91 13 18 H 0.13 1.92 8.06 -52.48 -0.42 1.50 13 LS Contribution 215.28 15.07 3.24 3.24 Total: -1.00 -26.34 215.28 -7.70 -34.04 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -0.29 Total: -3.93 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -0.24 Total: -25.20 kcal Atomic # 7 Polarization: -23.22 SS G_CDS: 0.73 Total: -22.49 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -4.60 Total: 1.74 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.52 Total: -2.30 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -26.34 -7.70 -34.04 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146631438.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.378 kcal (2) G-P(sol) polarization free energy of solvation -26.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds