Wall clock time and date at job start Mon Mar 30 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48503 * 109.47269 * 239.99723 * 3 2 1 5 5 H 1.48500 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47071 * 119.99820 * 3 2 1 7 7 C 1.39890 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00182 * 199.67608 * 7 2 1 9 9 C 1.41151 * 119.99806 * 19.67083 * 7 2 1 10 10 C 1.41074 * 120.24000 * 37.03030 * 9 7 2 11 11 F 1.35098 * 120.11104 * 0.02562 * 10 9 7 12 12 C 1.37756 * 119.76983 * 180.27023 * 10 9 7 13 13 C 1.38873 * 120.27586 * 359.43924 * 12 10 9 14 14 F 1.35102 * 119.75354 * 180.27512 * 13 12 10 15 15 C 1.39040 * 120.49693 * 0.29701 * 13 12 10 16 16 F 1.35093 * 119.88979 * 179.97438 * 15 13 12 17 17 C 1.37945 * 120.21573 * 359.97438 * 15 13 12 18 18 F 1.35100 * 120.13746 * 180.02562 * 17 15 13 19 19 H 0.97006 * 120.00180 * 359.97438 * 1 2 3 20 20 H 1.07993 * 119.86486 * 179.70896 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6964 1.2126 7 6 2.0085 -1.2115 -0.0005 8 1 3.0411 -1.2389 0.3143 9 6 1.3645 -2.3980 -0.4126 10 6 0.4363 -2.3707 -1.4746 11 9 0.1597 -1.2073 -2.1031 12 6 -0.1907 -3.5334 -1.8651 13 6 0.0961 -4.7323 -1.2256 14 9 -0.5209 -5.8674 -1.6208 15 6 1.0131 -4.7733 -0.1812 16 9 1.2824 -5.9462 0.4326 17 6 1.6487 -3.6201 0.2301 18 9 2.5398 -3.6618 1.2447 19 1 -0.4851 0.8401 0.0004 20 1 -0.9050 -3.5134 -2.6748 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148011006.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:36 Heat of formation + Delta-G solvation = -167.868510 kcal Electronic energy + Delta-G solvation = -14685.643934 eV Core-core repulsion = 11347.172515 eV Total energy + Delta-G solvation = -3338.471419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.021 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.61206 -47.86177 -47.44502 -47.23948 -37.01592 -33.92051 -30.02526 -28.86672 -25.48155 -21.87557 -21.73838 -18.11365 -17.34870 -17.03955 -16.06526 -15.66382 -15.32560 -14.81270 -14.47603 -14.25859 -14.08636 -13.76510 -13.71968 -13.30123 -13.16893 -12.20199 -11.68609 -11.62556 -11.27099 -10.84774 -10.70074 -10.19969 -10.17682 -9.36301 -7.87240 -7.53380 -7.19926 -4.83733 1.96750 2.00480 2.91214 2.94116 2.97594 3.70386 4.02917 4.61778 4.79580 5.19224 5.51921 5.60962 5.68991 6.23650 6.62266 6.74111 6.90469 7.04269 7.26920 7.56847 7.94732 8.21658 8.33140 9.78366 Molecular weight = 220.02amu Principal moments of inertia in cm(-1) A = 0.041251 B = 0.011533 C = 0.009392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.600306 B = 2427.333525 C = 2980.504628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.074 3.926 3 Si 0.923 3.077 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.097 0.903 9 C 0.069 3.931 10 C 0.074 3.926 11 F -0.126 7.126 12 C -0.141 4.141 13 C -0.027 4.027 14 F -0.148 7.148 15 C 0.060 3.940 16 F -0.142 7.142 17 C -0.010 4.010 18 F -0.137 7.137 19 H 0.293 0.707 20 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 0.002 -1.724 1.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.149 4.149 3 Si 0.746 3.254 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.115 0.885 9 C 0.064 3.936 10 C 0.053 3.947 11 F -0.104 7.104 12 C -0.162 4.162 13 C -0.048 4.048 14 F -0.127 7.127 15 C 0.039 3.961 16 F -0.121 7.121 17 C -0.031 4.031 18 F -0.116 7.116 19 H 0.104 0.896 20 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.425 0.127 -1.679 1.737 hybrid contribution 0.203 0.468 0.156 0.534 sum 0.628 0.596 -1.523 1.752 Atomic orbital electron populations 1.69747 1.07998 1.31205 1.29153 1.25952 0.94857 1.01950 0.92175 0.86078 0.80061 0.78816 0.80404 1.18261 1.19870 1.18555 1.19425 0.99362 0.90495 1.37078 0.88479 1.17366 0.92911 0.91988 0.91356 1.16994 1.02355 0.80584 0.94811 1.91388 1.92399 1.46522 1.80118 1.20390 1.02699 0.90529 1.02541 1.16272 1.03594 0.82915 1.02060 1.91364 1.81953 1.48856 1.90564 1.17329 1.01424 0.80895 0.96437 1.91395 1.93103 1.45576 1.82023 1.16997 0.99905 0.92921 0.93306 1.91356 1.65867 1.96993 1.57347 0.89554 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.48 11.14 55.55 0.62 -17.86 14 2 C 0.07 1.74 4.51 -17.33 -0.08 1.66 14 3 Si 0.92 17.53 29.60 -169.99 -5.03 12.50 14 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 14 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.44 -10.88 8.57 -37.86 -0.32 -11.20 14 8 H 0.10 2.32 7.92 -52.49 -0.42 1.90 14 9 C 0.07 1.73 5.40 -106.68 -0.58 1.15 14 10 C 0.07 1.77 6.68 -38.68 -0.26 1.51 14 11 F -0.13 -3.05 14.29 2.25 0.03 -3.02 14 12 C -0.14 -3.08 9.97 -39.52 -0.39 -3.48 14 13 C -0.03 -0.61 7.32 -39.05 -0.29 -0.90 14 14 F -0.15 -3.17 17.17 2.25 0.04 -3.13 14 15 C 0.06 1.41 7.30 -39.39 -0.29 1.12 14 16 F -0.14 -3.23 17.08 2.25 0.04 -3.19 14 17 C -0.01 -0.24 7.30 -38.65 -0.28 -0.52 14 18 F -0.14 -3.32 16.74 2.25 0.04 -3.28 14 19 H 0.29 6.45 8.30 -40.82 -0.34 6.11 14 20 H 0.13 2.48 8.06 -52.49 -0.42 2.05 14 LS Contribution 208.66 15.07 3.14 3.14 Total: -1.00 -25.41 208.66 -3.58 -28.99 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: 0.03 Total: -3.51 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.49 Total: -10.64 kcal Atomic # 7 Polarization: -18.48 SS G_CDS: 0.62 Total: -17.86 kcal Atomic # 9 Polarization: -12.78 SS G_CDS: 0.15 Total: -12.63 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -25.41 -3.58 -28.99 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148011006.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.875 kcal (2) G-P(sol) polarization free energy of solvation -25.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds