Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48502 * 109.47072 * 240.00221 * 3 2 1 5 5 H 1.48506 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47545 * 119.99955 * 3 2 1 7 7 C 1.37888 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99938 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99646 * 0.02562 * 7 2 1 10 10 O 1.42093 * 104.28080 * 63.92436 * 9 7 2 11 11 O 1.42105 * 104.27452 * 296.06391 * 9 7 2 12 12 C 1.81401 * 104.44612 * 179.97438 * 9 7 2 13 13 C 1.52997 * 109.47149 * 179.97438 * 12 9 7 14 14 H 1.09003 * 109.86881 * 58.99128 * 13 12 9 15 15 C 1.54093 * 109.88185 * 179.97438 * 13 12 9 16 16 C 1.54821 * 104.19058 * 121.45284 * 15 13 12 17 17 C 1.54992 * 102.08569 * 20.88188 * 16 15 13 18 18 O 1.43746 * 109.88194 * 297.83189 * 13 12 9 19 19 H 0.96997 * 119.99811 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47085 * 299.99751 * 12 9 7 21 21 H 1.09001 * 109.47417 * 59.99877 * 12 9 7 22 22 H 1.08998 * 110.49245 * 240.13403 * 15 13 12 23 23 H 1.09002 * 110.48721 * 2.64849 * 15 13 12 24 24 H 1.08995 * 110.90340 * 139.07674 * 16 15 13 25 25 H 1.08996 * 110.90882 * 262.65194 * 16 15 13 26 26 H 1.09003 * 110.61852 * 81.48176 * 17 16 15 27 27 H 1.09004 * 110.61767 * 204.46908 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4246 -2.7212 -1.2366 11 8 0.4238 -2.7206 1.2374 12 6 2.4185 -3.9903 0.0005 13 6 1.7725 -5.3772 0.0012 14 1 1.1370 -5.4903 -0.8772 15 6 2.8647 -6.4641 0.0005 16 6 2.5823 -7.2868 1.2813 17 6 1.0971 -6.9460 1.5649 18 8 0.9943 -5.5535 1.1969 19 1 -0.4850 0.8400 -0.0004 20 1 3.0377 -3.8780 -0.8895 21 1 3.0378 -3.8780 0.8905 22 1 2.7760 -7.0938 -0.8847 23 1 3.8547 -6.0102 0.0469 24 1 2.7077 -8.3532 1.0940 25 1 3.2205 -6.9601 2.1022 26 1 0.4385 -7.5558 0.9465 27 1 0.8672 -7.0818 2.6218 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148421155.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -136.344236 kcal Electronic energy + Delta-G solvation = -13585.873847 eV Core-core repulsion = 11049.530420 eV Total energy + Delta-G solvation = -2536.343428 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.21631 -34.87601 -33.86196 -32.91511 -32.16077 -31.30390 -26.32389 -25.65177 -22.07890 -20.91489 -18.45184 -16.87139 -16.24534 -15.76799 -15.35082 -15.24785 -14.13977 -13.75217 -13.74672 -13.52351 -12.43015 -12.06211 -11.92297 -11.61801 -11.50178 -11.12641 -11.08769 -11.01816 -10.65518 -10.53871 -10.05955 -9.97427 -9.51449 -9.19161 -9.11033 -8.53064 -6.56060 -5.19184 2.05078 3.15000 3.18503 3.23466 4.00108 4.12458 4.59277 4.76664 4.78058 4.98951 5.05179 5.29473 5.40106 5.57261 5.70532 5.73185 5.79854 5.87185 5.95620 6.02531 6.11517 6.36181 6.86185 7.09670 7.40438 8.01942 9.00230 10.38114 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.062497 B = 0.008652 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.915441 B = 3235.594777 C = 3361.973174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -1.014 5.014 8 H 0.096 0.904 9 S 2.539 3.461 10 O -0.983 6.983 11 O -0.963 6.963 12 C -0.640 4.640 13 C 0.084 3.916 14 H 0.080 0.920 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.043 3.957 18 O -0.360 6.360 19 H 0.288 0.712 20 H 0.129 0.871 21 H 0.125 0.875 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.277 -10.777 0.678 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.147 5.147 8 H 0.115 0.885 9 S 2.721 3.279 10 O -0.980 6.980 11 O -0.960 6.960 12 C -0.762 4.762 13 C 0.026 3.974 14 H 0.098 0.902 15 C -0.184 4.184 16 C -0.194 4.194 17 C -0.034 4.034 18 O -0.279 6.279 19 H 0.099 0.901 20 H 0.147 0.853 21 H 0.143 0.857 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.083 -10.711 0.784 11.882 hybrid contribution 1.573 0.784 -0.142 1.764 sum 6.656 -9.927 0.642 11.969 Atomic orbital electron populations 1.69948 1.06710 1.30329 1.39296 1.24715 0.94438 1.00497 0.88777 0.86258 0.79910 0.80007 0.79647 1.18961 1.20149 1.18927 1.30282 1.05422 1.11537 1.67412 0.88528 1.03399 0.74900 0.75333 0.74283 1.93339 1.70924 1.87099 1.46638 1.93359 1.70366 1.86490 1.45768 1.30790 1.21571 1.13604 1.10239 1.22372 0.92171 0.93570 0.89308 0.90244 1.23001 1.00036 0.97007 0.98377 1.23154 0.97633 1.00324 0.98269 1.23573 0.95224 0.83331 1.01237 1.89126 1.70362 1.25639 1.42764 0.90149 0.85300 0.85664 0.90555 0.90025 0.90385 0.90406 0.92148 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.37 13.03 55.43 0.72 -24.65 15 2 C 0.13 3.85 5.46 -17.81 -0.10 3.75 15 3 Si 0.92 20.99 29.54 -169.99 -5.02 15.97 15 4 H -0.26 -5.82 7.11 56.52 0.40 -5.41 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 7 C -1.01 -28.48 9.32 30.60 0.29 -28.19 15 8 H 0.10 2.42 7.81 -52.49 -0.41 2.01 15 9 S 2.54 68.33 4.30 -107.50 -0.46 67.87 15 10 O -0.98 -29.19 17.85 -57.54 -1.03 -30.22 15 11 O -0.96 -29.17 17.29 -60.84 -1.05 -30.23 15 12 C -0.64 -12.46 5.48 37.16 0.20 -12.26 15 13 C 0.08 1.49 3.45 -26.16 -0.09 1.40 15 14 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 15 C -0.15 -1.88 6.64 -25.20 -0.17 -2.04 15 16 C -0.16 -1.78 7.16 -24.72 -0.18 -1.95 15 17 C 0.04 0.59 7.72 38.21 0.29 0.88 15 18 O -0.36 -7.02 10.39 -38.45 -0.40 -7.42 15 19 H 0.29 7.89 8.31 -40.82 -0.34 7.55 15 20 H 0.13 2.14 8.14 -51.92 -0.42 1.72 15 21 H 0.12 2.25 8.14 -51.92 -0.42 1.83 15 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.08 0.98 7.70 -51.93 -0.40 0.58 15 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 247.91 15.07 3.74 3.74 Total: -1.00 -36.56 247.91 -6.58 -43.14 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.33 Total: 0.21 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 0.25 Total: -38.41 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.72 Total: -24.65 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -2.48 Total: -67.87 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 68.33 SS G_CDS: -0.46 Total: 67.87 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -36.56 -6.58 -43.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148421155.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.203 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds