Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48502 * 109.47072 * 240.00221 * 3 2 1 5 5 H 1.48506 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47545 * 119.99955 * 3 2 1 7 7 C 1.37888 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99938 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99646 * 0.02562 * 7 2 1 10 10 O 1.42093 * 104.28080 * 63.92436 * 9 7 2 11 11 O 1.42105 * 104.27452 * 296.06391 * 9 7 2 12 12 C 1.81401 * 104.44612 * 179.97438 * 9 7 2 13 13 C 1.52997 * 109.47149 * 179.97438 * 12 9 7 14 14 H 1.09003 * 109.86881 * 58.99128 * 13 12 9 15 15 C 1.54093 * 109.88185 * 179.97438 * 13 12 9 16 16 C 1.54821 * 104.19058 * 121.45284 * 15 13 12 17 17 C 1.54992 * 102.08569 * 20.88188 * 16 15 13 18 18 O 1.43746 * 109.88194 * 297.83189 * 13 12 9 19 19 H 0.96997 * 119.99811 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47085 * 299.99751 * 12 9 7 21 21 H 1.09001 * 109.47417 * 59.99877 * 12 9 7 22 22 H 1.08998 * 110.49245 * 240.13403 * 15 13 12 23 23 H 1.09002 * 110.48721 * 2.64849 * 15 13 12 24 24 H 1.08995 * 110.90340 * 139.07674 * 16 15 13 25 25 H 1.08996 * 110.90882 * 262.65194 * 16 15 13 26 26 H 1.09003 * 110.61852 * 81.48176 * 17 16 15 27 27 H 1.09004 * 110.61767 * 204.46908 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4246 -2.7212 -1.2366 11 8 0.4238 -2.7206 1.2374 12 6 2.4185 -3.9903 0.0005 13 6 1.7725 -5.3772 0.0012 14 1 1.1370 -5.4903 -0.8772 15 6 2.8647 -6.4641 0.0005 16 6 2.5823 -7.2868 1.2813 17 6 1.0971 -6.9460 1.5649 18 8 0.9943 -5.5535 1.1969 19 1 -0.4850 0.8400 -0.0004 20 1 3.0377 -3.8780 -0.8895 21 1 3.0378 -3.8780 0.8905 22 1 2.7760 -7.0938 -0.8847 23 1 3.8547 -6.0102 0.0469 24 1 2.7077 -8.3532 1.0940 25 1 3.2205 -6.9601 2.1022 26 1 0.4385 -7.5558 0.9465 27 1 0.8672 -7.0818 2.6218 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148421155.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -166.440903 kcal Electronic energy + Delta-G solvation = -13587.178937 eV Core-core repulsion = 11049.530420 eV Total energy + Delta-G solvation = -2537.648517 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42551 -37.07666 -36.04936 -35.05627 -33.43100 -32.52048 -28.32061 -27.10037 -23.20243 -22.11375 -20.50462 -18.81400 -17.89050 -17.21628 -16.98214 -16.65515 -15.93964 -15.73837 -15.62699 -14.51361 -13.93831 -13.69077 -13.52872 -13.28894 -12.95173 -12.77470 -12.61461 -12.30782 -12.27538 -12.21354 -12.04371 -11.59855 -11.16778 -11.09284 -10.77758 -10.56925 -8.66708 -7.40514 0.06068 1.33857 1.38544 1.50153 2.21749 2.65126 2.83499 3.20489 3.60575 3.71396 3.87440 3.90187 3.96996 4.17064 4.37813 4.51684 4.66056 4.75980 4.83599 4.89240 4.95662 5.10550 5.21773 5.30374 5.89204 5.91729 6.84974 8.29774 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.062497 B = 0.008652 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.915441 B = 3235.594777 C = 3361.973174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.990 3.010 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.249 1.249 7 C -1.039 5.039 8 H 0.122 0.878 9 S 2.514 3.486 10 O -1.031 7.031 11 O -1.017 7.017 12 C -0.602 4.602 13 C 0.067 3.933 14 H 0.074 0.926 15 C -0.138 4.138 16 C -0.146 4.146 17 C 0.027 3.973 18 O -0.408 6.408 19 H 0.294 0.706 20 H 0.165 0.835 21 H 0.146 0.854 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -11.794 0.541 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.148 4.148 3 Si 0.808 3.192 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.173 1.173 7 C -1.171 5.171 8 H 0.141 0.859 9 S 2.705 3.295 10 O -1.028 7.028 11 O -1.014 7.014 12 C -0.732 4.732 13 C 0.008 3.992 14 H 0.091 0.909 15 C -0.177 4.177 16 C -0.184 4.184 17 C -0.049 4.049 18 O -0.328 6.328 19 H 0.103 0.897 20 H 0.183 0.817 21 H 0.164 0.836 22 H 0.121 0.879 23 H 0.115 0.885 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.948 -11.696 0.648 14.156 hybrid contribution 0.691 0.938 -0.082 1.167 sum 8.639 -10.758 0.566 13.809 Atomic orbital electron populations 1.70084 1.08996 1.31768 1.41091 1.26096 0.95359 1.05526 0.87816 0.85175 0.78728 0.74451 0.80825 1.17048 1.19156 1.17292 1.30771 1.06925 1.12585 1.66808 0.85948 1.03474 0.76536 0.76823 0.72687 1.93273 1.73634 1.88334 1.47535 1.93291 1.73268 1.87856 1.46976 1.30368 1.18389 1.11315 1.13125 1.22658 0.93827 0.93773 0.88907 0.90858 1.23028 0.98561 0.95747 1.00333 1.23165 0.95421 1.02191 0.97594 1.23953 0.97703 0.81013 1.02219 1.89096 1.71214 1.29143 1.43365 0.89654 0.81722 0.83563 0.87900 0.88505 0.86907 0.90064 0.90727 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.04 13.03 21.45 0.28 -55.76 15 2 C 0.06 3.73 5.46 84.66 0.46 4.19 15 3 Si 0.99 42.49 29.54 68.60 2.03 44.52 15 4 H -0.25 -9.78 7.11 99.48 0.71 -9.08 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 15 7 C -1.04 -58.61 9.32 67.74 0.63 -57.98 15 8 H 0.12 5.96 7.81 -2.91 -0.02 5.94 15 9 S 2.51 138.74 4.30 -56.49 -0.24 138.50 15 10 O -1.03 -63.84 17.85 -127.65 -2.28 -66.12 15 11 O -1.02 -64.55 17.29 -124.49 -2.15 -66.70 15 12 C -0.60 -22.32 5.48 71.98 0.39 -21.92 15 13 C 0.07 2.26 3.45 30.96 0.11 2.36 15 14 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 15 C -0.14 -2.97 6.64 31.59 0.21 -2.76 15 16 C -0.15 -2.73 7.16 31.90 0.23 -2.50 15 17 C 0.03 0.68 7.72 72.66 0.56 1.24 15 18 O -0.41 -15.78 10.39 -145.90 -1.52 -17.29 15 19 H 0.29 16.72 8.31 -92.71 -0.77 15.95 15 20 H 0.16 4.90 8.14 -2.39 -0.02 4.88 15 21 H 0.15 4.86 8.14 -2.39 -0.02 4.84 15 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.10 1.81 7.70 -2.39 -0.02 1.79 15 24 H 0.11 1.36 8.14 -2.39 -0.02 1.34 15 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.10 2.32 8.14 -2.38 -0.02 2.30 15 Total: -1.00 -84.38 247.91 -0.14 -84.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.15 Total: 15.71 kcal Atomic # 6 Polarization: -79.97 SS G_CDS: 2.59 Total: -77.37 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.76 kcal Atomic # 8 Polarization: -144.17 SS G_CDS: -5.95 Total: -150.11 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 138.74 SS G_CDS: -0.24 Total: 138.50 kcal Total: -84.38 -0.14 -84.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148421155.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.928 kcal (2) G-P(sol) polarization free energy of solvation -84.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds