Wall clock time and date at job start Mon Mar 30 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47592 * 2 1 4 4 C 1.53008 * 109.47037 * 120.00433 * 2 1 3 5 5 C 1.50693 * 109.46990 * 184.99906 * 4 2 1 6 6 C 1.38244 * 120.00058 * 269.72478 * 5 4 2 7 7 C 1.38238 * 119.99945 * 179.76764 * 6 5 4 8 8 C 1.38234 * 120.00190 * 0.50622 * 7 6 5 9 9 C 1.38240 * 119.99648 * 359.74544 * 8 7 6 10 10 C 1.38230 * 120.00435 * 0.02562 * 9 8 7 11 11 N 1.46500 * 109.47096 * 239.99824 * 2 1 3 12 12 C 1.46503 * 120.00180 * 300.00829 * 11 2 1 13 13 C 1.36939 * 119.99828 * 120.00000 * 11 2 1 14 14 H 1.07999 * 120.00098 * 334.79709 * 13 11 2 15 15 C 1.38818 * 119.99842 * 154.79780 * 13 11 2 16 16 N 1.31618 * 119.99903 * 4.27324 * 15 13 11 17 17 Si 1.86800 * 119.99547 * 184.27057 * 15 13 11 18 18 H 1.48491 * 109.47600 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46884 * 120.00248 * 17 15 13 20 20 H 1.48507 * 109.46690 * 239.99647 * 17 15 13 21 21 H 1.08999 * 109.47592 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46765 * 299.99971 * 1 2 3 23 23 H 1.08999 * 109.47025 * 59.99377 * 1 2 3 24 24 H 1.09003 * 109.46625 * 304.99461 * 4 2 1 25 25 H 1.09001 * 109.47116 * 64.99539 * 4 2 1 26 26 H 1.07998 * 119.99761 * 359.97438 * 6 5 4 27 27 H 1.08001 * 119.99651 * 180.22861 * 7 6 5 28 28 H 1.08000 * 120.00087 * 179.72418 * 8 7 6 29 29 H 1.08003 * 119.99322 * 179.97438 * 9 8 7 30 30 H 1.07995 * 120.00321 * 179.97438 * 10 9 8 31 31 H 1.09006 * 109.46640 * 264.51573 * 12 11 2 32 32 H 1.09001 * 109.47341 * 144.51476 * 12 11 2 33 33 H 1.09000 * 109.46947 * 24.51110 * 12 11 2 34 34 H 0.96996 * 119.99876 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 3.5418 -0.6151 1.3127 6 6 4.3291 -1.5847 0.7202 7 6 5.7068 -1.4847 0.7743 8 6 6.2973 -0.4205 1.4298 9 6 5.5101 0.5464 2.0268 10 6 4.1324 0.4489 1.9687 11 7 2.0183 -0.6906 -1.1961 12 6 1.6643 -2.0932 -1.4281 13 6 2.8056 -0.0251 -2.0975 14 1 2.7460 1.0504 -2.1759 15 6 3.6803 -0.7329 -2.9106 16 7 3.6929 -2.0486 -2.8752 17 14 4.8391 0.1820 -4.0549 18 1 4.6286 1.6444 -3.9069 19 1 6.2437 -0.1540 -3.7091 20 1 4.5658 -0.2174 -5.4589 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.6054 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2056 26 1 3.8677 -2.4187 0.2122 27 1 6.3218 -2.2403 0.3082 28 1 7.3737 -0.3447 1.4759 29 1 5.9715 1.3775 2.5393 30 1 3.5174 1.2040 2.4354 31 1 2.4632 -2.7356 -1.0576 32 1 1.5283 -2.2618 -2.4963 33 1 0.7380 -2.3257 -0.9027 34 1 4.3043 -2.5431 -3.4431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200977449.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:42 Heat of formation + Delta-G solvation = 27.965003 kcal Electronic energy + Delta-G solvation = -15301.632078 eV Core-core repulsion = 13006.354533 eV Total energy + Delta-G solvation = -2295.277545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12290 -37.97079 -34.68487 -32.44731 -31.55799 -30.72663 -27.95509 -27.12726 -24.83453 -23.24301 -22.26848 -20.48238 -18.77611 -17.50012 -17.01707 -16.05921 -15.90084 -15.46182 -14.92187 -14.79043 -14.18725 -14.13077 -13.52750 -13.45378 -13.16893 -12.84462 -12.65594 -12.60127 -12.54484 -12.20203 -12.06520 -11.70119 -11.60372 -11.48257 -11.31170 -10.51562 -9.58561 -9.34653 -8.57737 -7.73200 -5.16254 0.68084 0.75952 1.42107 1.45550 1.52330 2.53859 3.10057 3.42589 3.78186 4.10617 4.17763 4.30063 4.38059 4.46056 4.67567 4.72656 4.78535 4.84719 4.93205 4.99165 5.06875 5.17369 5.28236 5.38315 5.44584 5.49885 5.63903 5.72694 5.75359 5.80009 5.94276 6.05795 6.37643 6.45571 7.29843 8.02368 8.45965 9.29302 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.014849 C = 0.010353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.425270 B = 1885.175026 C = 2704.005236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.170 3.830 3 H 0.052 0.948 4 C -0.087 4.087 5 C -0.071 4.071 6 C -0.093 4.093 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.131 4.131 10 C -0.131 4.131 11 N -0.603 5.603 12 C 0.184 3.816 13 C -0.245 4.245 14 H 0.058 0.942 15 C -0.034 4.034 16 N -0.926 5.926 17 Si 0.943 3.057 18 H -0.273 1.273 19 H -0.296 1.296 20 H -0.295 1.295 21 H 0.049 0.951 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.003 0.997 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 3.687 10.283 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.063 3.937 3 H 0.070 0.930 4 C -0.126 4.126 5 C -0.071 4.071 6 C -0.111 4.111 7 C -0.159 4.159 8 C -0.159 4.159 9 C -0.148 4.148 10 C -0.149 4.149 11 N -0.326 5.326 12 C 0.040 3.960 13 C -0.375 4.375 14 H 0.076 0.924 15 C -0.230 4.230 16 N -0.574 5.574 17 Si 0.773 3.227 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.222 1.222 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.022 0.978 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.608 3.587 10.180 10.810 hybrid contribution 0.905 -0.062 -1.297 1.583 sum 0.297 3.525 8.883 9.561 Atomic orbital electron populations 1.22146 0.96068 1.01383 1.01365 1.20577 0.93028 0.94844 0.85240 0.92950 1.21136 0.90926 1.01202 0.99380 1.19941 0.96305 0.94526 0.96366 1.20976 0.93901 0.99388 0.96854 1.21196 0.95104 0.99446 1.00125 1.21272 1.00453 0.94940 0.99219 1.21330 0.93780 0.99284 1.00449 1.21246 0.95432 0.97810 1.00405 1.43994 1.58147 1.09334 1.21162 1.20522 0.93646 0.84573 0.97285 1.19342 1.13563 0.91054 1.13558 0.92403 1.25529 0.99307 0.96105 1.02020 1.70222 1.39429 1.05351 1.42385 0.85549 0.79720 0.78719 0.78692 1.19758 1.22383 1.22222 0.93235 0.90430 0.94060 0.89089 0.92654 0.88731 0.87486 0.84767 0.83736 0.84365 0.97844 0.96349 0.96429 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.18 71.98 0.66 -4.20 16 2 C 0.17 6.63 2.70 44.99 0.12 6.75 16 3 H 0.05 2.12 7.88 -2.39 -0.02 2.10 16 4 C -0.09 -3.03 4.78 29.85 0.14 -2.89 16 5 C -0.07 -2.72 4.95 -19.86 -0.10 -2.82 16 6 C -0.09 -4.01 9.32 22.27 0.21 -3.80 16 7 C -0.14 -5.60 10.05 22.27 0.22 -5.37 16 8 C -0.14 -4.74 10.05 22.27 0.22 -4.52 16 9 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 10 C -0.13 -4.30 9.70 22.27 0.22 -4.08 16 11 N -0.60 -29.34 2.21 -702.74 -1.55 -30.90 16 12 C 0.18 9.08 7.86 127.77 1.00 10.09 16 13 C -0.24 -13.40 9.59 84.03 0.81 -12.59 16 14 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 15 C -0.03 -1.93 5.38 84.86 0.46 -1.47 16 16 N -0.93 -53.86 10.11 21.65 0.22 -53.64 16 17 Si 0.94 46.22 29.56 68.60 2.03 48.25 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H 0.05 1.59 6.66 -2.39 -0.02 1.57 16 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 24 H 0.09 2.50 8.09 -2.39 -0.02 2.48 16 25 H 0.05 2.01 7.45 -2.39 -0.02 1.99 16 26 H 0.09 4.60 6.24 -2.91 -0.02 4.59 16 27 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 30 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.00 0.18 5.64 -2.38 -0.01 0.17 16 32 H 0.02 0.99 7.01 -2.39 -0.02 0.97 16 33 H 0.02 0.75 6.44 -2.39 -0.02 0.73 16 34 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -61.88 276.86 5.94 -55.94 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.06 Total: 9.08 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.19 Total: -28.72 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.34 Total: -84.54 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -61.88 5.94 -55.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200977449.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.905 kcal (2) G-P(sol) polarization free energy of solvation -61.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds