Wall clock time and date at job start Mon Mar 30 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47038 * 2 1 4 4 C 1.46903 * 110.99902 * 66.04987 * 3 2 1 5 5 C 1.52997 * 109.46957 * 193.95028 * 4 3 2 6 6 C 1.38732 * 110.99857 * 190.00279 * 3 2 1 7 7 C 1.38752 * 120.29136 * 300.29846 * 6 3 2 8 8 C 1.38161 * 120.02109 * 180.27464 * 7 6 3 9 9 C 1.38901 * 120.62994 * 359.72565 * 8 7 6 10 10 C 1.36452 * 120.59677 * 359.97343 * 9 8 7 11 11 C 1.40729 * 119.94820 * 0.02562 * 10 9 8 12 12 C 1.41039 * 120.30232 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99615 * 205.24016 * 12 11 10 14 14 C 1.39930 * 120.00521 * 25.24786 * 12 11 10 15 15 N 1.30884 * 119.99384 * 17.22185 * 14 12 11 16 16 Si 1.86795 * 120.00279 * 197.22555 * 14 12 11 17 17 H 1.48501 * 109.46950 * 265.18637 * 16 14 12 18 18 H 1.48501 * 109.47033 * 25.17870 * 16 14 12 19 19 H 1.48494 * 109.47137 * 145.18518 * 16 14 12 20 20 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47228 * 299.99855 * 1 2 3 22 22 H 1.09000 * 109.47428 * 59.99341 * 1 2 3 23 23 H 1.09005 * 109.46636 * 240.00312 * 2 1 3 24 24 H 1.08993 * 109.46778 * 120.00499 * 2 1 3 25 25 H 1.08998 * 109.47012 * 313.95266 * 4 3 2 26 26 H 1.09001 * 109.47226 * 73.95243 * 4 3 2 27 27 H 1.09001 * 109.46868 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47454 * 299.99967 * 5 4 3 29 29 H 1.09001 * 109.46977 * 60.00062 * 5 4 3 30 30 H 1.07995 * 119.99288 * 0.02562 * 7 6 3 31 31 H 1.08007 * 119.68778 * 179.73975 * 8 7 6 32 32 H 1.07997 * 119.70544 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.02297 * 180.02562 * 10 9 8 34 34 H 0.97001 * 119.99765 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2534 5 6 1.8769 3.5739 1.0888 6 6 3.3879 1.4285 -0.2250 7 6 4.2606 0.7875 0.6426 8 6 5.6226 0.8392 0.4164 9 6 6.1325 1.5246 -0.6788 10 6 5.2971 2.1589 -1.5517 11 6 3.9056 2.1221 -1.3450 12 6 3.0353 2.7746 -2.2427 13 1 2.0619 3.1026 -1.9089 14 6 3.4328 2.9968 -3.5658 15 7 4.4374 2.3254 -4.0688 16 14 2.5297 4.2517 -4.6142 17 1 1.4820 3.5669 -5.4133 18 1 1.8968 5.2674 -3.7350 19 1 3.4924 4.9182 -5.5275 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8932 -0.5139 0.8899 25 1 0.6266 1.8676 1.4966 26 1 2.3074 1.6984 2.0574 27 1 1.6172 4.0798 2.0187 28 1 2.9206 3.7731 0.8456 29 1 1.2397 3.9423 0.2849 30 1 3.8754 0.2513 1.4973 31 1 6.2972 0.3419 1.0976 32 1 7.1997 1.5558 -0.8411 33 1 5.7036 2.6887 -2.4004 34 1 4.7127 2.4791 -4.9861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214529370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:00 Heat of formation + Delta-G solvation = 19.642431 kcal Electronic energy + Delta-G solvation = -15158.821253 eV Core-core repulsion = 12863.182815 eV Total energy + Delta-G solvation = -2295.638438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.63357 -35.83030 -33.54909 -31.16669 -29.92698 -29.43404 -26.97659 -24.83076 -22.49606 -21.76694 -20.56754 -18.95459 -17.20438 -15.78768 -15.06529 -14.70702 -14.23164 -14.02656 -13.47673 -13.05049 -12.73631 -12.48624 -11.79243 -11.58283 -11.50986 -11.39912 -11.03081 -10.97022 -10.80951 -10.67806 -10.51063 -10.34578 -10.07698 -9.71299 -9.42840 -9.09623 -7.36082 -7.33578 -7.21411 -6.68409 -4.21668 2.81256 2.98711 3.11981 3.17164 3.29261 3.99770 4.69510 4.85093 5.57272 5.65784 5.78500 5.88083 5.97384 6.05290 6.17064 6.18586 6.27809 6.42389 6.44692 6.57008 6.60221 6.70037 6.74190 6.98688 7.15622 7.24658 7.43845 7.51089 7.85270 7.95302 8.01532 8.16505 8.36400 8.53486 8.81524 8.98703 9.21791 10.24744 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.012657 C = 0.009733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.390427 B = 2211.656789 C = 2876.184961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 N -0.469 5.469 4 C 0.055 3.945 5 C -0.139 4.139 6 C -0.037 4.037 7 C -0.115 4.115 8 C -0.243 4.243 9 C -0.106 4.106 10 C -0.161 4.161 11 C 0.133 3.867 12 C -0.426 4.426 13 H 0.089 0.911 14 C 0.071 3.929 15 N -0.796 5.796 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.260 1.260 19 H -0.278 1.278 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -0.084 4.328 6.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 N -0.190 5.190 4 C -0.072 4.072 5 C -0.197 4.197 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.263 4.263 9 C -0.125 4.125 10 C -0.181 4.181 11 C 0.130 3.870 12 C -0.455 4.455 13 H 0.107 0.893 14 C -0.146 4.146 15 N -0.421 5.421 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.184 1.184 19 H -0.203 1.203 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.327 0.136 3.712 5.702 hybrid contribution 0.178 -0.082 0.123 0.231 sum -4.149 0.054 3.835 5.650 Atomic orbital electron populations 1.21829 0.96135 1.00391 1.02037 1.21996 0.94493 0.90065 1.00049 1.58989 1.13549 1.13933 1.32502 1.22127 0.98966 0.95364 0.90737 1.21651 1.03030 0.94969 1.00020 1.18421 0.86039 1.07556 1.01230 1.20964 0.94287 1.00246 0.98062 1.20150 0.94189 1.10400 1.01558 1.20421 0.97447 0.99105 0.95511 1.21057 0.93317 1.03570 1.00134 1.17434 0.91655 0.88060 0.89900 1.19552 1.02231 1.30446 0.93265 0.89307 1.26018 0.94590 0.95078 0.98953 1.69874 1.23741 1.33259 1.15250 0.86340 0.79782 0.81282 0.79560 1.19705 1.18395 1.20327 0.93289 0.93249 0.91892 0.91055 0.96272 0.92097 0.96001 0.93984 0.92095 0.92216 0.90105 0.89990 0.89744 0.86419 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.87 37.16 0.37 -1.90 16 2 C 0.06 1.16 5.25 -3.83 -0.02 1.14 16 3 N -0.47 -9.99 3.66 -170.61 -0.62 -10.61 16 4 C 0.05 1.02 5.47 -3.82 -0.02 1.00 16 5 C -0.14 -2.53 9.94 37.16 0.37 -2.16 16 6 C -0.04 -0.90 3.74 -83.29 -0.31 -1.21 16 7 C -0.12 -2.67 8.51 -39.42 -0.34 -3.00 16 8 C -0.24 -5.62 10.03 -39.36 -0.40 -6.02 16 9 C -0.11 -2.55 9.97 -39.98 -0.40 -2.95 16 10 C -0.16 -4.20 8.63 -39.28 -0.34 -4.54 16 11 C 0.13 3.50 5.58 -106.64 -0.60 2.91 16 12 C -0.43 -11.15 8.68 -37.89 -0.33 -11.47 16 13 H 0.09 2.31 7.60 -52.48 -0.40 1.91 16 14 C 0.07 1.77 5.14 -17.32 -0.09 1.68 16 15 N -0.80 -20.56 10.97 55.55 0.61 -19.95 16 16 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.71 6.31 -51.93 -0.33 0.38 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 24 H 0.02 0.35 7.45 -51.93 -0.39 -0.04 16 25 H 0.06 0.99 5.98 -51.93 -0.31 0.68 16 26 H 0.02 0.41 7.08 -51.93 -0.37 0.04 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.26 7.52 -51.93 -0.39 0.87 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.72 7.13 -52.49 -0.37 1.35 16 31 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.12 3.16 6.19 -52.49 -0.32 2.83 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -26.90 276.67 -7.94 -34.85 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.97 Total: 4.24 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.10 Total: -26.53 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: -0.01 Total: -30.57 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.90 -7.94 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214529370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.491 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds