Wall clock time and date at job start Mon Mar 30 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39875 * 125.67761 * 2 1 4 4 C 1.30314 * 109.23409 * 180.25181 * 3 2 1 5 5 C 1.41892 * 108.04387 * 359.76992 * 4 3 2 6 6 C 1.41595 * 126.55701 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00090 * 180.02562 * 6 5 4 8 8 C 1.39699 * 119.99940 * 0.02562 * 6 5 4 9 9 N 1.31031 * 120.00087 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99994 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47146 * 89.99890 * 10 8 6 12 12 H 1.48501 * 109.47176 * 209.99848 * 10 8 6 13 13 H 1.48498 * 109.47138 * 329.99996 * 10 8 6 14 14 C 1.34501 * 125.67584 * 179.83717 * 2 1 3 15 15 C 1.50703 * 126.40565 * 0.02562 * 14 2 1 16 16 F 1.39905 * 109.47157 * 29.68942 * 15 14 2 17 17 F 1.39900 * 109.47159 * 269.69242 * 15 14 2 18 18 F 1.39897 * 109.47274 * 149.68933 * 15 14 2 19 19 H 1.09000 * 109.47020 * 270.16656 * 1 2 3 20 20 H 1.09002 * 109.46954 * 30.16362 * 1 2 3 21 21 H 1.08999 * 109.47248 * 150.16297 * 1 2 3 22 22 H 1.07996 * 125.98206 * 179.78575 * 4 3 2 23 23 H 0.96993 * 119.99891 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2808 1.1362 0.0000 4 6 3.5307 0.7674 -0.0054 5 6 3.5703 -0.6510 -0.0038 6 6 4.7308 -1.4623 -0.0087 7 1 4.6375 -2.5383 -0.0072 8 6 5.9964 -0.8709 -0.0154 9 7 6.1096 0.4345 -0.0177 10 14 7.5274 -1.9412 -0.0212 11 1 7.9265 -2.2267 -1.4228 12 1 8.6311 -1.2301 0.6726 13 1 7.2417 -3.2176 0.6819 14 6 2.2495 -1.0926 0.0031 15 6 1.7858 -2.5265 0.0066 16 9 0.5523 -2.6194 -0.6469 17 9 1.6486 -2.9690 1.3267 18 9 2.7260 -3.3223 -0.6566 19 1 -0.3633 0.0030 1.0277 20 1 -0.3633 0.8885 -0.5164 21 1 -0.3634 -0.8914 -0.5113 22 1 4.3866 1.4259 -0.0100 23 1 6.9884 0.8451 -0.0220 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214538739.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:35 Heat of formation + Delta-G solvation = -99.119478 kcal Electronic energy + Delta-G solvation = -15309.570992 eV Core-core repulsion = 12129.833811 eV Total energy + Delta-G solvation = -3179.737182 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.02169 -48.59900 -48.46380 -41.32839 -35.79466 -33.50080 -31.90197 -28.85978 -26.54846 -25.75017 -21.89975 -21.57182 -19.54404 -19.39379 -19.10382 -17.93952 -16.59684 -16.17708 -15.93907 -15.48263 -15.32455 -15.04238 -14.85650 -14.68023 -14.65201 -14.42275 -13.46525 -13.27588 -13.09420 -12.85949 -12.84276 -12.27225 -11.90761 -11.25811 -11.08714 -10.06758 -9.38419 -8.58832 -6.27905 0.84356 1.45602 1.49003 1.58656 1.67206 2.14729 2.20455 2.26966 3.13284 3.25740 3.37802 3.68880 4.06651 4.46768 4.66031 4.75529 5.04335 5.23058 5.44518 5.88996 6.36644 6.48882 6.74350 6.91853 7.22206 8.40167 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.033785 B = 0.012617 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.572718 B = 2218.618145 C = 2867.389585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.380 5.380 3 N -0.301 5.301 4 C 0.002 3.998 5 C 0.017 3.983 6 C -0.462 4.462 7 H 0.081 0.919 8 C 0.034 3.966 9 N -0.839 5.839 10 Si 0.992 3.008 11 H -0.263 1.263 12 H -0.265 1.265 13 H -0.263 1.263 14 C -0.232 4.232 15 C 0.567 3.433 16 F -0.181 7.181 17 F -0.187 7.187 18 F -0.173 7.173 19 H 0.072 0.928 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.205 0.795 23 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -3.601 -0.181 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.172 5.172 3 N -0.124 5.124 4 C -0.187 4.187 5 C 0.006 3.994 6 C -0.495 4.495 7 H 0.099 0.901 8 C -0.179 4.179 9 N -0.468 5.468 10 Si 0.813 3.187 11 H -0.188 1.188 12 H -0.189 1.189 13 H -0.187 1.187 14 C -0.352 4.352 15 C 0.511 3.489 16 F -0.162 7.162 17 F -0.169 7.169 18 F -0.154 7.154 19 H 0.090 0.910 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.221 0.779 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.042 -2.525 -0.176 5.642 hybrid contribution 0.968 -1.110 0.027 1.473 sum -4.074 -3.634 -0.149 5.462 Atomic orbital electron populations 1.22098 0.73789 1.05336 1.03447 1.47322 1.05972 1.01256 1.62682 1.76452 1.03696 1.09572 1.22684 1.25032 0.93644 0.96193 1.03789 1.18365 0.90771 0.93100 0.97136 1.19392 0.90040 0.94646 1.45374 0.90073 1.26677 1.03462 0.96573 0.91201 1.69479 1.27425 1.11604 1.38243 0.85034 0.75806 0.78469 0.79428 1.18766 1.18882 1.18667 1.20416 0.93003 0.87002 1.34738 1.16837 0.73661 0.85142 0.73273 1.93031 1.44810 1.96651 1.81712 1.93161 1.95618 1.91047 1.37034 1.93131 1.65489 1.75858 1.80942 0.90993 0.88685 0.88552 0.77877 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.11 11.16 127.77 1.43 4.54 14 2 N -0.38 -17.42 3.98 -353.07 -1.41 -18.82 14 3 N -0.30 -15.09 12.47 -55.93 -0.70 -15.78 14 4 C 0.00 0.08 10.91 85.82 0.94 1.02 14 5 C 0.02 0.92 5.91 -21.30 -0.13 0.79 14 6 C -0.46 -24.67 8.82 23.45 0.21 -24.47 14 7 H 0.08 4.24 6.17 -2.91 -0.02 4.22 14 8 C 0.03 1.66 5.49 85.17 0.47 2.12 14 9 N -0.84 -41.61 10.33 21.79 0.22 -41.38 14 10 Si 0.99 37.73 29.56 68.60 2.03 39.76 14 11 H -0.26 -9.69 7.11 99.48 0.71 -8.98 14 12 H -0.26 -9.45 7.11 99.48 0.71 -8.74 14 13 H -0.26 -9.94 7.11 99.48 0.71 -9.24 14 14 C -0.23 -11.43 6.50 42.40 0.28 -11.15 14 15 C 0.57 24.40 3.39 71.24 0.24 24.64 14 16 F -0.18 -6.71 14.53 44.97 0.65 -6.06 14 17 F -0.19 -7.83 17.30 44.97 0.78 -7.05 14 18 F -0.17 -7.64 15.03 44.97 0.68 -6.96 14 19 H 0.07 2.13 8.14 -2.39 -0.02 2.11 14 20 H 0.09 2.74 8.14 -2.39 -0.02 2.72 14 21 H 0.10 2.92 5.52 -2.39 -0.01 2.91 14 22 H 0.21 10.85 5.77 -2.91 -0.02 10.83 14 23 H 0.29 12.96 8.30 -92.71 -0.77 12.19 14 Total: -1.00 -57.72 218.75 6.95 -50.77 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.26 Total: 8.04 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 3.43 Total: -2.50 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.88 Total: -75.99 kcal Atomic # 9 Polarization: -22.18 SS G_CDS: 2.11 Total: -20.07 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -57.72 6.95 -50.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214538739.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.351 kcal (2) G-P(sol) polarization free energy of solvation -57.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds