Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86803 * 119.99535 * 2 1 4 4 H 1.48499 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46888 * 300.00073 * 3 2 1 6 6 H 1.48497 * 109.47299 * 59.99979 * 3 2 1 7 7 C 1.39873 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99798 * 197.96094 * 7 2 1 9 9 C 1.41203 * 120.00119 * 17.96202 * 7 2 1 10 10 C 1.40856 * 120.22276 * 204.53025 * 9 7 2 11 11 C 1.36317 * 120.01922 * 180.38274 * 10 9 7 12 12 C 1.39492 * 120.58652 * 359.92690 * 11 10 9 13 13 C 1.39635 * 120.03306 * 359.60300 * 12 11 10 14 14 C 1.38011 * 120.01949 * 0.58043 * 13 12 11 15 15 O 1.36294 * 121.02363 * 180.64107 * 13 12 11 16 16 C 1.35067 * 115.62814 * 348.01545 * 15 13 12 17 17 O 1.20822 * 121.68386 * 218.83229 * 16 15 13 18 18 C 1.51645 * 116.63315 * 39.10964 * 16 15 13 19 19 O 1.35950 * 118.73813 * 179.05129 * 12 11 10 20 20 H 0.96999 * 120.00450 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.98542 * 0.40244 * 10 9 7 22 22 H 1.08001 * 119.70620 * 179.97438 * 11 10 9 23 23 H 1.07997 * 120.11354 * 179.73361 * 14 13 12 24 24 H 1.08998 * 109.87960 * 66.03246 * 18 16 15 25 25 H 1.09000 * 109.87602 * 187.10904 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0489 -1.2341 0.2879 9 6 1.3540 -2.4042 -0.3782 10 6 1.8261 -3.6485 0.0833 11 6 1.1960 -4.7981 -0.2901 12 6 0.0814 -4.7567 -1.1279 13 6 -0.4038 -3.5298 -1.5853 14 6 0.2263 -2.3580 -1.2185 15 8 -1.4990 -3.4650 -2.3939 16 6 -1.9119 -4.6413 -2.9137 17 8 -2.3197 -4.7257 -4.0479 18 6 -1.8440 -5.8495 -1.9999 19 8 -0.5062 -5.9272 -1.4924 20 1 -0.4851 0.8400 0.0004 21 1 2.6874 -3.6916 0.7335 22 1 1.5625 -5.7494 0.0664 23 1 -0.1451 -1.4086 -1.5749 24 1 -2.5468 -5.7306 -1.1753 25 1 -2.0801 -6.7531 -2.5619 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214541654.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -88.185154 kcal Electronic energy + Delta-G solvation = -14382.946839 eV Core-core repulsion = 11713.247795 eV Total energy + Delta-G solvation = -2669.699044 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.07330 -38.25179 -36.95694 -36.47050 -33.60514 -29.81692 -29.30756 -27.92993 -25.19450 -23.06133 -21.64323 -19.56912 -18.64221 -17.34816 -16.68406 -16.43882 -15.36049 -15.28610 -14.76906 -14.35144 -13.72365 -13.34462 -12.96660 -12.66351 -12.34729 -12.10743 -11.55320 -11.27488 -11.20407 -10.97709 -10.27343 -10.23812 -10.08144 -9.49359 -9.16919 -7.62565 -7.33462 -6.95747 -4.55317 1.83245 2.46902 2.67683 2.97914 3.00962 3.04821 3.29276 3.79091 4.00268 4.31294 4.34759 5.12512 5.34814 5.39959 5.64859 6.25773 6.40381 6.68593 6.94196 7.00238 7.08251 7.29058 7.46647 7.58778 7.72226 7.85877 8.12768 8.40646 8.61712 8.63712 9.96218 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.043935 B = 0.008698 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.150767 B = 3218.498061 C = 3719.442345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.448 4.448 8 H 0.087 0.913 9 C 0.116 3.884 10 C -0.208 4.208 11 C -0.070 4.070 12 C -0.093 4.093 13 C 0.063 3.937 14 C -0.154 4.154 15 O -0.289 6.289 16 C 0.457 3.543 17 O -0.450 6.450 18 C 0.025 3.975 19 O -0.304 6.304 20 H 0.285 0.715 21 H 0.110 0.890 22 H 0.109 0.891 23 H 0.136 0.864 24 H 0.094 0.906 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -3.774 0.372 3.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.113 3.887 10 C -0.227 4.227 11 C -0.089 4.089 12 C -0.136 4.136 13 C 0.022 3.978 14 C -0.174 4.174 15 O -0.204 6.204 16 C 0.297 3.703 17 O -0.332 6.332 18 C -0.053 4.053 19 O -0.221 6.221 20 H 0.097 0.903 21 H 0.128 0.872 22 H 0.127 0.873 23 H 0.154 0.846 24 H 0.112 0.888 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.941 -3.648 -0.192 3.772 hybrid contribution -0.096 0.843 0.030 0.849 sum -1.037 -2.805 -0.162 2.995 Atomic orbital electron populations 1.69829 1.07745 1.29886 1.33168 1.26019 0.94811 1.01832 0.92010 0.86171 0.80970 0.80378 0.78787 1.18134 1.19488 1.19781 1.19595 0.98442 0.90835 1.38790 0.89474 1.17374 0.90207 0.92665 0.88458 1.20674 1.04081 0.91808 1.06185 1.19643 0.94562 0.98236 0.96442 1.18426 1.02253 0.82494 1.10461 1.18880 0.87773 0.94936 0.96198 1.20755 0.99317 0.94953 1.02397 1.84667 1.42683 1.33263 1.59791 1.24075 0.74601 0.84723 0.86890 1.90614 1.41585 1.83729 1.17261 1.23470 0.86811 0.97496 0.97507 1.86233 1.25514 1.29339 1.80976 0.90347 0.87240 0.87304 0.84599 0.88848 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.22 10.96 55.54 0.61 -18.61 15 2 C 0.07 1.72 5.13 -17.34 -0.09 1.63 15 3 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 15 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 7 C -0.45 -10.99 9.04 -37.84 -0.34 -11.33 15 8 H 0.09 2.01 7.91 -52.49 -0.41 1.60 15 9 C 0.12 2.90 5.57 -106.84 -0.60 2.30 15 10 C -0.21 -4.68 9.73 -39.28 -0.38 -5.06 15 11 C -0.07 -1.50 9.87 -39.81 -0.39 -1.89 15 12 C -0.09 -2.09 6.52 -38.59 -0.25 -2.34 15 13 C 0.06 1.52 6.51 -39.14 -0.25 1.26 15 14 C -0.15 -3.94 8.60 -38.73 -0.33 -4.27 15 15 O -0.29 -6.67 10.23 -31.53 -0.32 -7.00 15 16 C 0.46 9.17 7.83 36.47 0.29 9.46 15 17 O -0.45 -9.54 17.97 -18.59 -0.33 -9.88 15 18 C 0.02 0.40 7.44 36.47 0.27 0.67 15 19 O -0.30 -6.01 10.41 -30.90 -0.32 -6.33 15 20 H 0.29 6.36 8.30 -40.82 -0.34 6.02 15 21 H 0.11 2.22 8.06 -52.49 -0.42 1.80 15 22 H 0.11 2.02 8.06 -52.49 -0.42 1.60 15 23 H 0.14 3.63 6.15 -52.49 -0.32 3.30 15 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.13 1.65 8.14 -51.93 -0.42 1.23 15 LS Contribution 231.48 15.07 3.49 3.49 Total: -1.00 -27.41 231.48 -5.56 -32.97 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -1.56 Total: 2.48 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.08 Total: -9.57 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.61 Total: -18.61 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.98 Total: -23.21 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.41 -5.56 -32.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214541654.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.215 kcal (2) G-P(sol) polarization free energy of solvation -27.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds