Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30974 * 1 3 3 Si 1.86805 * 119.99669 * 2 1 4 4 H 1.48510 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47319 * 300.00080 * 3 2 1 6 6 H 1.48499 * 109.47106 * 60.00477 * 3 2 1 7 7 C 1.39792 * 120.00529 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00175 * 197.71914 * 7 2 1 9 9 C 1.41040 * 119.99491 * 17.71867 * 7 2 1 10 10 C 1.41110 * 120.12015 * 25.08951 * 9 7 2 11 11 C 1.35596 * 120.16219 * 180.29473 * 10 9 7 12 12 C 1.40688 * 121.01171 * 359.70606 * 11 10 9 13 13 S 1.76023 * 130.19187 * 180.02562 * 12 11 10 14 14 C 1.75268 * 92.23554 * 180.02562 * 13 12 11 15 15 C 1.31764 * 111.43654 * 359.97438 * 14 13 12 16 16 C 1.39806 * 120.22351 * 0.02562 * 12 11 10 17 17 C 1.40625 * 120.11259 * 204.84045 * 9 7 2 18 18 O 1.35522 * 120.08259 * 0.02562 * 17 9 7 19 19 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.92079 * 0.02745 * 10 9 7 21 21 H 1.07994 * 119.49497 * 179.73141 * 11 10 9 22 22 H 1.07999 * 124.27858 * 180.02562 * 14 13 12 23 23 H 1.07999 * 122.55680 * 180.02562 * 15 14 13 24 24 H 0.96706 * 113.99923 * 269.72505 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 3.7038 1.3465 -0.0006 5 1 1.8849 2.3966 -1.2125 6 1 1.8850 2.3965 1.2125 7 6 2.0088 -1.2106 -0.0005 8 1 3.0503 -1.2328 0.2841 9 6 1.3538 -2.4029 -0.3728 10 6 0.2267 -2.3566 -1.2207 11 6 -0.4073 -3.5019 -1.5743 12 6 0.0438 -4.7522 -1.1131 13 16 -0.5843 -6.3685 -1.4154 14 6 0.6538 -7.1101 -0.4209 15 6 1.4661 -6.2070 0.0898 16 6 1.1609 -4.8324 -0.2764 17 6 1.8248 -3.6424 0.0954 18 8 2.9094 -3.6946 0.9063 19 1 -0.4850 0.8400 0.0004 20 1 -0.1344 -1.4063 -1.5853 21 1 -1.2714 -3.4536 -2.2202 22 1 0.7404 -8.1728 -0.2492 23 1 2.2952 -6.4675 0.7311 24 1 3.7492 -3.7815 0.4347 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214562638.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -30.368298 kcal Electronic energy + Delta-G solvation = -12196.974494 eV Core-core repulsion = 9972.535447 eV Total energy + Delta-G solvation = -2224.439046 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.030 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.26955 -37.27279 -36.64134 -34.68518 -31.17658 -29.51620 -27.25015 -24.09566 -22.85417 -21.44411 -19.45184 -18.86171 -17.37563 -17.11998 -16.52526 -15.79809 -15.38617 -14.81151 -14.62351 -14.11118 -13.83242 -13.23325 -13.11401 -12.76772 -12.63334 -12.18811 -11.85978 -11.78935 -11.56129 -11.05305 -10.88534 -9.96455 -9.20224 -8.80113 -8.39652 -6.34245 0.16021 0.68105 0.96295 1.33371 1.38566 1.43426 1.54469 1.71782 2.18449 2.58347 3.43509 3.87401 4.03969 4.31489 4.60368 4.78524 4.88261 5.08940 5.20764 5.33809 5.49878 5.61705 5.71876 5.90203 6.14790 6.41985 6.71576 6.79539 7.34193 8.23510 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.052487 B = 0.008806 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.335990 B = 3178.947259 C = 3636.571888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.471 4.471 8 H 0.081 0.919 9 C 0.064 3.936 10 C -0.134 4.134 11 C -0.088 4.088 12 C -0.242 4.242 13 S 0.044 5.956 14 C -0.184 4.184 15 C -0.133 4.133 16 C -0.078 4.078 17 C -0.033 4.033 18 O -0.492 6.492 19 H 0.293 0.707 20 H 0.121 0.879 21 H 0.117 0.883 22 H 0.197 0.803 23 H 0.150 0.850 24 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 -5.213 -2.420 5.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.100 0.900 9 C 0.060 3.940 10 C -0.155 4.155 11 C -0.110 4.110 12 C -0.357 4.357 13 S 0.303 5.697 14 C -0.317 4.317 15 C -0.164 4.164 16 C -0.086 4.086 17 C -0.082 4.082 18 O -0.300 6.300 19 H 0.104 0.896 20 H 0.138 0.862 21 H 0.135 0.865 22 H 0.214 0.786 23 H 0.167 0.833 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.116 -5.640 -2.767 6.283 hybrid contribution 1.663 1.330 0.559 2.202 sum 1.547 -4.310 -2.208 5.084 Atomic orbital electron populations 1.69907 1.09047 1.31101 1.34448 1.26853 0.95568 1.04785 0.91030 0.85057 0.79385 0.75613 0.79070 1.18039 1.18424 1.19176 1.19662 0.98633 0.91844 1.39801 0.90050 1.18111 0.92950 0.92801 0.90107 1.20945 0.97891 0.97165 0.99539 1.20083 0.99772 0.90332 1.00806 1.22261 1.04405 0.97503 1.11490 1.83191 1.35082 0.96221 1.55191 1.25188 0.99227 1.04041 1.03222 1.21031 1.02296 0.90025 1.03038 1.19662 0.96902 0.93658 0.98334 1.18509 0.95353 0.90598 1.03729 1.84678 1.15429 1.95747 1.34184 0.89620 0.86172 0.86495 0.78610 0.83276 0.77636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.74 10.97 21.81 0.24 -41.50 14 2 C 0.03 1.64 5.13 85.20 0.44 2.08 14 3 Si 0.99 37.06 29.59 68.60 2.03 39.09 14 4 H -0.26 -9.44 7.11 99.48 0.71 -8.74 14 5 H -0.26 -9.21 7.11 99.48 0.71 -8.51 14 6 H -0.27 -9.69 7.11 99.48 0.71 -8.98 14 7 C -0.47 -25.04 8.68 23.33 0.20 -24.84 14 8 H 0.08 4.20 7.62 -2.91 -0.02 4.18 14 9 C 0.06 3.49 5.56 -21.30 -0.12 3.38 14 10 C -0.13 -6.99 8.59 22.36 0.19 -6.80 14 11 C -0.09 -4.16 9.98 22.26 0.22 -3.94 14 12 C -0.24 -11.05 6.51 23.25 0.15 -10.90 14 13 S 0.04 1.56 23.23 -56.49 -1.31 0.24 14 14 C -0.18 -5.87 11.01 67.08 0.74 -5.13 14 15 C -0.13 -5.00 10.27 23.40 0.24 -4.76 14 16 C -0.08 -3.67 6.03 -20.29 -0.12 -3.79 14 17 C -0.03 -1.69 6.80 23.59 0.16 -1.53 14 18 O -0.49 -22.79 12.64 -88.25 -1.12 -23.91 14 19 H 0.29 13.31 8.30 -92.71 -0.77 12.54 14 20 H 0.12 6.33 6.18 -2.91 -0.02 6.31 14 21 H 0.12 4.87 8.06 -2.91 -0.02 4.85 14 22 H 0.20 4.42 8.06 -2.91 -0.02 4.40 14 23 H 0.15 4.94 8.06 -2.91 -0.02 4.91 14 24 H 0.37 13.55 9.06 -74.05 -0.67 12.87 14 Total: -1.00 -60.97 231.67 2.51 -58.45 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.57 Total: 23.85 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.10 Total: -56.23 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.24 Total: -41.50 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.12 Total: -23.91 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.31 Total: 0.24 kcal Total: -60.97 2.51 -58.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214562638.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.085 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds