Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86798 * 119.99583 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99841 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00291 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99986 * 3 2 1 7 7 C 1.38803 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99824 * 0.27502 * 7 2 1 10 10 C 1.37882 * 119.99660 * 179.71933 * 9 7 2 11 11 N 1.28988 * 124.82747 * 359.70462 * 10 9 7 12 12 C 1.34611 * 117.91008 * 179.83811 * 11 10 9 13 13 C 1.41199 * 128.74653 * 180.18358 * 12 11 10 14 14 C 1.37146 * 120.42678 * 180.32338 * 13 12 11 15 15 C 1.38759 * 120.61601 * 359.93462 * 14 13 12 16 16 C 1.37698 * 120.00560 * 0.02562 * 15 14 13 17 17 C 1.39282 * 120.19855 * 0.02562 * 16 15 14 18 18 S 1.75813 * 124.82248 * 179.97438 * 10 9 7 19 19 H 0.97005 * 120.00115 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00420 * 359.72561 * 9 7 2 21 21 H 1.08001 * 119.78252 * 0.26123 * 13 12 11 22 22 H 1.07998 * 119.69145 * 179.97438 * 14 13 12 23 23 H 1.08008 * 119.99976 * 180.02562 * 15 14 13 24 24 H 1.08004 * 119.90432 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4403 0.7001 7 6 2.0096 -1.2021 -0.0005 8 1 3.0896 -1.2020 -0.0010 9 7 1.3249 -2.3879 -0.0068 10 6 2.0144 -3.5819 -0.0131 11 7 3.2997 -3.6904 -0.0193 12 6 3.8276 -4.9287 -0.0217 13 6 5.1872 -5.3098 -0.0246 14 6 5.5367 -6.6359 -0.0335 15 6 4.5621 -7.6236 -0.0383 16 6 3.2297 -7.2763 -0.0348 17 6 2.8554 -5.9347 -0.0269 18 16 1.2666 -5.1731 -0.0209 19 1 -0.4850 0.8401 0.0004 20 1 0.3549 -2.3880 -0.0068 21 1 5.9567 -4.5520 -0.0209 22 1 6.5803 -6.9141 -0.0361 23 1 4.8486 -8.6650 -0.0449 24 1 2.4725 -8.0464 -0.0390 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222665606.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = 34.288689 kcal Electronic energy + Delta-G solvation = -11805.091491 eV Core-core repulsion = 9615.748933 eV Total energy + Delta-G solvation = -2189.342558 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.68832 -38.44060 -36.20545 -33.70336 -31.66637 -29.67017 -27.33917 -24.54833 -23.30418 -21.85620 -20.30209 -18.93700 -17.86236 -16.99131 -16.34231 -16.00144 -15.64706 -15.51594 -14.96710 -14.47233 -13.63015 -13.61147 -13.19101 -12.82826 -12.65488 -12.51188 -12.12781 -11.64794 -11.58656 -10.80362 -10.56710 -10.09850 -8.95697 -8.71457 -8.70645 -5.96028 -0.02447 0.36374 0.45531 0.99606 1.39544 1.40300 1.53944 1.82423 2.19899 2.80400 2.90293 3.14544 3.91666 4.11939 4.36430 4.58675 4.69405 4.87617 5.18680 5.25836 5.43769 5.52138 5.67248 5.71118 6.12371 6.50360 6.92080 7.01192 7.58400 8.44777 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.050872 B = 0.007607 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.269279 B = 3680.159047 C = 4220.581145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.012 4.012 3 Si 1.009 2.991 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.308 4.308 8 H 0.101 0.899 9 N -0.498 5.498 10 C 0.318 3.682 11 N -0.626 5.626 12 C 0.137 3.863 13 C -0.145 4.145 14 C -0.076 4.076 15 C -0.155 4.155 16 C -0.054 4.054 17 C -0.240 4.240 18 S -0.029 6.029 19 H 0.287 0.713 20 H 0.412 0.588 21 H 0.122 0.878 22 H 0.162 0.838 23 H 0.164 0.836 24 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -9.461 -0.050 10.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.441 4.441 8 H 0.119 0.881 9 N -0.112 5.112 10 C -0.056 4.056 11 N -0.361 5.361 12 C 0.013 3.987 13 C -0.168 4.168 14 C -0.097 4.097 15 C -0.177 4.177 16 C -0.077 4.077 17 C -0.360 4.360 18 S 0.217 5.783 19 H 0.097 0.903 20 H 0.249 0.751 21 H 0.140 0.860 22 H 0.179 0.821 23 H 0.182 0.818 24 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.350 -8.840 -0.047 9.853 hybrid contribution 0.265 0.923 -0.007 0.960 sum 4.615 -7.918 -0.054 9.165 Atomic orbital electron populations 1.69723 1.07249 1.30558 1.46803 1.26359 0.96715 1.03104 0.95369 0.84676 0.77893 0.75321 0.79017 1.19226 1.19275 1.19025 1.20099 0.93561 0.82237 1.48223 0.88111 1.40396 1.07952 1.00963 1.61894 1.23729 0.90029 0.90263 1.01577 1.66126 1.08911 1.23882 1.37170 1.19436 0.96044 0.85498 0.97744 1.20694 0.91399 0.97778 1.06913 1.21183 1.01255 0.90698 0.96527 1.21209 0.90921 1.00824 1.04699 1.20544 0.97960 0.91277 0.97943 1.23414 0.93578 0.99714 1.19341 1.84092 1.08912 1.00598 1.84687 0.90324 0.75103 0.85984 0.82091 0.81844 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.94 13.05 21.65 0.28 -46.66 14 2 C -0.01 -0.61 5.50 84.87 0.47 -0.14 14 3 Si 1.01 40.34 29.55 68.60 2.03 42.37 14 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 14 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 14 6 H -0.27 -10.59 7.11 99.48 0.71 -9.89 14 7 C -0.31 -16.63 9.78 84.03 0.82 -15.81 14 8 H 0.10 5.65 7.33 -2.91 -0.02 5.63 14 9 N -0.50 -25.89 5.40 -191.79 -1.04 -26.93 14 10 C 0.32 15.88 8.20 179.77 1.47 17.35 14 11 N -0.63 -32.10 9.77 -189.22 -1.85 -33.95 14 12 C 0.14 6.07 6.94 39.85 0.28 6.35 14 13 C -0.14 -5.19 10.10 22.74 0.23 -4.97 14 14 C -0.08 -2.02 9.99 22.14 0.22 -1.80 14 15 C -0.15 -3.85 10.05 22.27 0.22 -3.63 14 16 C -0.05 -1.65 10.06 22.39 0.23 -1.43 14 17 C -0.24 -9.59 6.52 22.92 0.15 -9.44 14 18 S -0.03 -1.20 23.39 -56.49 -1.32 -2.52 14 19 H 0.29 13.75 8.31 -92.70 -0.77 12.98 14 20 H 0.41 20.87 8.01 -92.71 -0.74 20.13 14 21 H 0.12 4.18 8.06 -2.91 -0.02 4.15 14 22 H 0.16 2.89 8.06 -2.91 -0.02 2.87 14 23 H 0.16 2.64 8.06 -2.91 -0.02 2.62 14 24 H 0.14 3.46 8.06 -2.91 -0.02 3.44 14 Total: -1.00 -61.04 235.49 2.68 -58.36 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.49 Total: 22.83 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.09 Total: -13.51 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -2.60 Total: -107.53 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -1.32 Total: -2.52 kcal Total: -61.04 2.68 -58.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222665606.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.650 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds