Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.82482 * 2 1 4 4 O 1.43240 * 109.83160 * 239.11544 * 2 1 3 5 5 C 1.43644 * 109.97293 * 242.11300 * 4 2 1 6 6 C 1.54947 * 105.13318 * 335.56837 * 5 4 2 7 7 C 1.54376 * 109.90488 * 120.93855 * 2 1 3 8 8 H 1.08992 * 110.85097 * 22.72087 * 7 2 1 9 9 S 1.81401 * 110.84660 * 259.10159 * 7 2 1 10 10 O 1.42109 * 110.54248 * 302.33784 * 9 7 2 11 11 O 1.42099 * 110.54636 * 79.08863 * 9 7 2 12 12 C 1.76204 * 104.45141 * 190.71477 * 9 7 2 13 13 H 1.07997 * 119.99803 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99890 * 179.97438 * 12 9 7 15 15 N 1.31514 * 120.00473 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99825 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.46783 * 60.00111 * 16 14 12 18 18 H 1.48494 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46778 * 300.00120 * 16 14 12 20 20 H 1.08995 * 109.47359 * 179.43010 * 1 2 3 21 21 H 1.08998 * 109.46935 * 299.43348 * 1 2 3 22 22 H 1.09006 * 109.46940 * 59.43382 * 1 2 3 23 23 H 1.09006 * 110.31054 * 216.65675 * 5 4 2 24 24 H 1.08996 * 110.39945 * 94.52484 * 5 4 2 25 25 H 1.08995 * 111.12977 * 154.36873 * 6 5 4 26 26 H 1.09009 * 111.12280 * 278.52776 * 6 5 4 27 27 H 0.96993 * 120.00331 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 8 2.0159 -0.6917 -1.1564 5 6 2.7764 -1.8427 -0.7561 6 6 3.2754 -1.5202 0.6749 7 6 2.0556 -0.7463 1.2450 8 1 1.3043 -1.4357 1.6300 9 16 2.5767 0.4256 2.5279 10 8 3.5766 1.3020 2.0262 11 8 1.4495 0.9273 3.2327 12 6 3.4233 -0.5669 3.7124 13 1 3.5214 -1.6307 3.5541 14 6 3.9614 0.0148 4.8407 15 7 3.8432 1.3105 5.0327 16 14 4.8596 -1.0373 6.0961 17 1 6.0186 -1.7010 5.4471 18 1 5.3403 -0.1787 7.2081 19 1 3.9341 -2.0684 6.6305 20 1 -0.3634 -1.0275 -0.0102 21 1 -0.3633 0.5050 0.8950 22 1 -0.3633 0.5226 -0.8849 23 1 3.6224 -1.9895 -1.4277 24 1 2.1444 -2.7306 -0.7452 25 1 3.4612 -2.4328 1.2412 26 1 4.1637 -0.8889 0.6483 27 1 4.2214 1.7196 5.8266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235352084.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = -138.475438 kcal Electronic energy + Delta-G solvation = -13854.156015 eV Core-core repulsion = 11317.720171 eV Total energy + Delta-G solvation = -2536.435844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14881 -35.15991 -34.13436 -33.06385 -32.13524 -31.23025 -26.25287 -25.89106 -21.72229 -21.16781 -18.52885 -17.38152 -16.40190 -16.00897 -15.14146 -14.46776 -14.23778 -13.92877 -13.62720 -13.52780 -12.52422 -12.25721 -11.99189 -11.80998 -11.27195 -11.21781 -11.14887 -10.83043 -10.70845 -10.60821 -10.32295 -10.24196 -9.45277 -9.32152 -9.22266 -8.72739 -6.68476 -5.32273 1.80482 3.07836 3.11986 3.16272 3.94907 4.04916 4.46307 4.64889 4.84194 5.20527 5.31643 5.43684 5.49120 5.51280 5.67960 5.76990 5.79980 5.96646 6.10494 6.18916 6.31947 6.35648 6.68766 7.17030 7.29653 7.90616 8.88152 10.26255 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045540 B = 0.010952 C = 0.009786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.700363 B = 2555.911349 C = 2860.421128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 H 0.083 0.917 4 O -0.378 6.378 5 C 0.056 3.944 6 C -0.124 4.124 7 C -0.636 4.636 8 H 0.135 0.865 9 S 2.537 3.463 10 O -0.971 6.971 11 O -0.974 6.974 12 C -1.004 5.004 13 H 0.100 0.900 14 C 0.134 3.866 15 N -0.835 5.835 16 Si 0.920 3.080 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -6.187 -6.345 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.045 3.955 3 H 0.101 0.899 4 O -0.297 6.297 5 C -0.021 4.021 6 C -0.161 4.161 7 C -0.738 4.738 8 H 0.153 0.847 9 S 2.719 3.281 10 O -0.968 6.968 11 O -0.971 6.971 12 C -1.138 5.138 13 H 0.118 0.882 14 C -0.085 4.085 15 N -0.463 5.463 16 Si 0.744 3.256 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.189 1.189 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.187 -5.051 -6.503 8.519 hybrid contribution 0.540 -1.518 0.920 1.856 sum -1.647 -6.569 -5.583 8.776 Atomic orbital electron populations 1.22254 0.94336 1.02936 1.03138 1.22333 0.94606 0.95686 0.82860 0.89881 1.88333 1.70889 1.40591 1.29903 1.23354 0.94680 0.88721 0.95359 1.22960 0.96338 1.01360 0.95492 1.32349 1.07286 1.17843 1.16286 0.84682 1.03543 0.74962 0.75198 0.74442 1.93367 1.58273 1.63096 1.82055 1.93359 1.55735 1.78603 1.69446 1.30083 1.53426 1.08208 1.22039 0.88189 1.24729 0.92004 0.94822 0.96931 1.69927 1.38136 1.10238 1.28035 0.86217 0.79930 0.80202 0.79284 1.18836 1.20090 1.18877 0.91910 0.90388 0.91538 0.89651 0.92434 0.88741 0.88622 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.45 37.16 0.35 -2.26 15 2 C 0.10 1.87 3.78 -26.01 -0.10 1.77 15 3 H 0.08 1.57 7.62 -51.93 -0.40 1.17 15 4 O -0.38 -6.59 11.02 -35.23 -0.39 -6.98 15 5 C 0.06 0.82 7.78 38.18 0.30 1.12 15 6 C -0.12 -2.07 6.23 -24.48 -0.15 -2.22 15 7 C -0.64 -12.11 3.14 -24.79 -0.08 -12.18 15 8 H 0.13 2.29 7.85 -51.93 -0.41 1.88 15 9 S 2.54 64.61 3.90 -107.50 -0.42 64.19 15 10 O -0.97 -27.50 17.47 -57.54 -1.00 -28.51 15 11 O -0.97 -27.64 17.85 -57.54 -1.03 -28.67 15 12 C -1.00 -26.68 8.94 30.60 0.27 -26.40 15 13 H 0.10 2.35 7.80 -52.49 -0.41 1.94 15 14 C 0.13 3.67 5.46 -17.82 -0.10 3.57 15 15 N -0.83 -24.41 13.03 55.43 0.72 -23.69 15 16 Si 0.92 20.16 29.54 -169.99 -5.02 15.14 15 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.10 1.70 7.84 -51.92 -0.41 1.29 15 27 H 0.29 7.64 8.31 -40.82 -0.34 7.30 15 LS Contribution 247.17 15.07 3.72 3.72 Total: -1.00 -33.72 247.17 -6.21 -39.93 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.29 Total: 1.47 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 0.50 Total: -36.60 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.72 Total: -23.69 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -2.42 Total: -64.16 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 64.61 SS G_CDS: -0.42 Total: 64.19 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.72 -6.21 -39.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235352084.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.549 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds