Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.82482 * 2 1 4 4 O 1.43240 * 109.83160 * 239.11544 * 2 1 3 5 5 C 1.43644 * 109.97293 * 242.11300 * 4 2 1 6 6 C 1.54947 * 105.13318 * 335.56837 * 5 4 2 7 7 C 1.54376 * 109.90488 * 120.93855 * 2 1 3 8 8 H 1.08992 * 110.85097 * 22.72087 * 7 2 1 9 9 S 1.81401 * 110.84660 * 259.10159 * 7 2 1 10 10 O 1.42109 * 110.54248 * 302.33784 * 9 7 2 11 11 O 1.42099 * 110.54636 * 79.08863 * 9 7 2 12 12 C 1.76204 * 104.45141 * 190.71477 * 9 7 2 13 13 H 1.07997 * 119.99803 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99890 * 179.97438 * 12 9 7 15 15 N 1.31514 * 120.00473 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99825 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.46783 * 60.00111 * 16 14 12 18 18 H 1.48494 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46778 * 300.00120 * 16 14 12 20 20 H 1.08995 * 109.47359 * 179.43010 * 1 2 3 21 21 H 1.08998 * 109.46935 * 299.43348 * 1 2 3 22 22 H 1.09006 * 109.46940 * 59.43382 * 1 2 3 23 23 H 1.09006 * 110.31054 * 216.65675 * 5 4 2 24 24 H 1.08996 * 110.39945 * 94.52484 * 5 4 2 25 25 H 1.08995 * 111.12977 * 154.36873 * 6 5 4 26 26 H 1.09009 * 111.12280 * 278.52776 * 6 5 4 27 27 H 0.96993 * 120.00331 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 8 2.0159 -0.6917 -1.1564 5 6 2.7764 -1.8427 -0.7561 6 6 3.2754 -1.5202 0.6749 7 6 2.0556 -0.7463 1.2450 8 1 1.3043 -1.4357 1.6300 9 16 2.5767 0.4256 2.5279 10 8 3.5766 1.3020 2.0262 11 8 1.4495 0.9273 3.2327 12 6 3.4233 -0.5669 3.7124 13 1 3.5214 -1.6307 3.5541 14 6 3.9614 0.0148 4.8407 15 7 3.8432 1.3105 5.0327 16 14 4.8596 -1.0373 6.0961 17 1 6.0186 -1.7010 5.4471 18 1 5.3403 -0.1787 7.2081 19 1 3.9341 -2.0684 6.6305 20 1 -0.3634 -1.0275 -0.0102 21 1 -0.3633 0.5050 0.8950 22 1 -0.3633 0.5226 -0.8849 23 1 3.6224 -1.9895 -1.4277 24 1 2.1444 -2.7306 -0.7452 25 1 3.4612 -2.4328 1.2412 26 1 4.1637 -0.8889 0.6483 27 1 4.2214 1.7196 5.8266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235352084.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = -165.671525 kcal Electronic energy + Delta-G solvation = -13855.335326 eV Core-core repulsion = 11317.720171 eV Total energy + Delta-G solvation = -2537.615154 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49928 -37.25735 -36.22416 -35.10579 -33.55114 -32.51558 -28.25113 -27.25392 -23.08597 -22.62583 -20.47493 -19.11095 -18.27668 -17.42780 -16.97226 -16.16511 -15.88577 -15.71920 -15.25816 -14.85446 -13.97453 -13.87411 -13.59468 -13.28798 -12.98559 -12.95940 -12.54578 -12.44045 -12.37503 -12.31061 -12.18883 -11.99207 -11.24609 -11.18080 -10.69997 -10.60203 -8.70036 -7.43221 -0.11408 1.35182 1.39057 1.50904 2.19034 2.62614 2.64713 2.97835 3.37192 3.54755 3.80041 3.90663 4.00470 4.18371 4.23141 4.41074 4.63323 4.71069 4.80869 4.87124 4.92384 5.06420 5.16321 5.29698 5.88154 5.91148 6.82707 8.27000 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045540 B = 0.010952 C = 0.009786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.700363 B = 2555.911349 C = 2860.421128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.062 0.938 4 O -0.386 6.386 5 C 0.055 3.945 6 C -0.131 4.131 7 C -0.607 4.607 8 H 0.165 0.835 9 S 2.518 3.482 10 O -1.018 7.018 11 O -1.021 7.021 12 C -1.022 5.022 13 H 0.128 0.872 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.990 3.010 17 H -0.247 1.247 18 H -0.270 1.270 19 H -0.248 1.248 20 H 0.084 0.916 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.111 0.889 24 H 0.088 0.912 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 -9.157 -6.982 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 H 0.080 0.920 4 O -0.306 6.306 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.717 4.717 8 H 0.182 0.818 9 S 2.708 3.292 10 O -1.015 7.015 11 O -1.018 7.018 12 C -1.156 5.156 13 H 0.146 0.854 14 C -0.146 4.146 15 N -0.520 5.520 16 Si 0.808 3.192 17 H -0.170 1.170 18 H -0.194 1.194 19 H -0.172 1.172 20 H 0.103 0.897 21 H 0.087 0.913 22 H 0.102 0.898 23 H 0.129 0.871 24 H 0.106 0.894 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.155 -7.977 -7.108 10.899 hybrid contribution 0.508 -0.641 0.980 1.276 sum -1.648 -8.617 -6.129 10.702 Atomic orbital electron populations 1.22272 0.92112 1.04567 1.03655 1.22385 0.96439 0.94763 0.82594 0.91997 1.88326 1.71340 1.41674 1.29303 1.23631 0.95866 0.88630 0.94030 1.23153 0.94464 1.01796 0.97491 1.31906 1.09385 1.16332 1.14027 0.81769 1.03473 0.74068 0.76196 0.75455 1.93305 1.59608 1.65730 1.82884 1.93297 1.56305 1.80467 1.71705 1.30526 1.53029 1.09697 1.22319 0.85445 1.26061 0.92794 0.96086 0.99629 1.70059 1.40048 1.12631 1.29282 0.85175 0.79127 0.78504 0.76435 1.17047 1.19398 1.17163 0.89728 0.91264 0.89758 0.87141 0.89363 0.85930 0.90421 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 9.45 71.98 0.68 -4.16 15 2 C 0.10 3.37 3.78 31.06 0.12 3.49 15 3 H 0.06 2.39 7.62 -2.39 -0.02 2.37 15 4 O -0.39 -12.40 11.02 -148.98 -1.64 -14.04 15 5 C 0.05 1.38 7.78 72.65 0.56 1.95 15 6 C -0.13 -4.02 6.23 32.05 0.20 -3.82 15 7 C -0.61 -22.11 3.14 31.85 0.10 -22.01 15 8 H 0.16 5.04 7.85 -2.39 -0.02 5.02 15 9 S 2.52 131.17 3.90 -56.49 -0.22 130.95 15 10 O -1.02 -60.38 17.47 -127.65 -2.23 -62.61 15 11 O -1.02 -60.15 17.85 -127.65 -2.28 -62.43 15 12 C -1.02 -54.15 8.94 67.73 0.61 -53.55 15 13 H 0.13 5.75 7.80 -2.91 -0.02 5.72 15 14 C 0.07 3.69 5.46 84.65 0.46 4.15 15 15 N -0.89 -53.69 13.03 21.45 0.28 -53.41 15 16 Si 0.99 40.41 29.54 68.60 2.03 42.43 15 17 H -0.25 -9.32 7.11 99.48 0.71 -8.61 15 18 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 19 H -0.25 -9.40 7.11 99.48 0.71 -8.69 15 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.08 2.10 8.14 -2.38 -0.02 2.08 15 23 H 0.11 2.27 8.14 -2.38 -0.02 2.25 15 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.12 3.05 8.14 -2.39 -0.02 3.03 15 26 H 0.08 2.68 7.84 -2.38 -0.02 2.66 15 27 H 0.29 16.10 8.31 -92.71 -0.77 15.33 15 Total: -1.00 -75.73 247.17 -0.18 -75.91 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.16 Total: 17.15 kcal Atomic # 6 Polarization: -76.68 SS G_CDS: 2.73 Total: -73.95 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.28 Total: -53.41 kcal Atomic # 8 Polarization: -132.92 SS G_CDS: -6.15 Total: -139.07 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 131.17 SS G_CDS: -0.22 Total: 130.95 kcal Total: -75.73 -0.18 -75.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235352084.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.762 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds