Wall clock time and date at job start Mon Mar 30 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.89746 * 2 1 4 4 O 1.43236 * 109.83181 * 120.93350 * 2 1 3 5 5 C 1.43644 * 109.97047 * 117.79902 * 4 2 1 6 6 C 1.54947 * 105.13715 * 24.43150 * 5 4 2 7 7 C 1.54383 * 109.83096 * 239.07144 * 2 1 3 8 8 H 1.08998 * 110.84362 * 337.52108 * 7 2 1 9 9 S 1.81399 * 110.85131 * 100.93672 * 7 2 1 10 10 O 1.42100 * 110.54228 * 68.37571 * 9 7 2 11 11 O 1.42100 * 110.54341 * 291.62689 * 9 7 2 12 12 C 1.76199 * 104.45040 * 180.02562 * 9 7 2 13 13 H 1.08005 * 119.99978 * 0.02562 * 12 9 7 14 14 C 1.37871 * 119.99882 * 180.02562 * 12 9 7 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 H 1.09000 * 109.47140 * 180.93293 * 1 2 3 21 21 H 1.09008 * 109.47045 * 300.93282 * 1 2 3 22 22 H 1.09000 * 109.47307 * 60.92794 * 1 2 3 23 23 H 1.09004 * 110.30855 * 143.34224 * 5 4 2 24 24 H 1.09003 * 110.31505 * 265.51624 * 5 4 2 25 25 H 1.08998 * 111.12670 * 205.63618 * 6 5 4 26 26 H 1.08996 * 111.12638 * 81.46740 * 6 5 4 27 27 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6926 1.1558 5 6 2.7746 -1.8444 0.7545 6 6 3.2730 -1.5221 -0.6768 7 6 2.0537 -0.7464 -1.2458 8 1 1.2998 -1.4322 -1.6325 9 16 2.5753 0.4252 -2.5287 10 8 3.7369 1.1321 -2.1159 11 8 1.4519 1.1112 -3.0640 12 6 3.1336 -0.5933 -3.8536 13 1 3.1029 -1.6687 -3.7580 14 6 3.6095 -0.0175 -5.0124 15 7 3.6473 1.2919 -5.1287 16 14 4.2020 -1.0974 -6.4168 17 1 5.6521 -1.3721 -6.2523 18 1 3.4512 -2.3785 -6.4069 19 1 3.9738 -0.3998 -7.7078 20 1 -0.3633 -1.0275 0.0167 21 1 -0.3633 0.5283 0.8816 22 1 -0.3634 0.4993 -0.8982 23 1 3.6210 -1.9925 1.4253 24 1 2.1400 -2.7306 0.7435 25 1 3.4571 -2.4348 -1.2435 26 1 4.1619 -0.8920 -0.6507 27 1 3.3400 1.8526 -4.3992 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235604253.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:02 Heat of formation + Delta-G solvation = -141.916159 kcal Electronic energy + Delta-G solvation = -13894.813811 eV Core-core repulsion = 11358.228766 eV Total energy + Delta-G solvation = -2536.585044 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.27293 -35.51017 -34.61571 -33.15649 -32.25339 -31.31449 -26.17968 -25.51082 -21.85319 -21.25868 -19.17153 -17.73965 -16.53012 -16.14264 -14.86402 -14.55429 -14.38810 -13.99708 -13.91908 -13.65844 -12.80097 -12.48127 -12.10277 -11.84237 -11.30063 -11.10397 -11.00974 -10.95519 -10.84288 -10.67466 -10.57511 -10.33769 -9.71434 -9.44368 -9.17792 -8.47549 -7.17348 -5.40944 1.56547 3.20974 3.23480 3.41709 3.85150 4.10745 4.33029 4.66008 4.73888 4.99590 5.16990 5.17773 5.32509 5.34749 5.42395 5.66747 5.72002 5.85786 5.99920 6.08356 6.18203 6.28272 6.41018 7.05919 7.54092 8.04898 8.63140 10.22295 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045967 B = 0.010815 C = 0.009858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.983288 B = 2588.322353 C = 2839.601457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 H 0.079 0.921 4 O -0.377 6.377 5 C 0.057 3.943 6 C -0.127 4.127 7 C -0.622 4.622 8 H 0.138 0.862 9 S 2.508 3.492 10 O -0.980 6.980 11 O -0.983 6.983 12 C -1.067 5.067 13 H 0.100 0.900 14 C 0.090 3.910 15 N -0.840 5.840 16 Si 1.082 2.918 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.273 1.273 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 -6.829 7.102 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.097 0.903 4 O -0.296 6.296 5 C -0.020 4.020 6 C -0.165 4.165 7 C -0.726 4.726 8 H 0.157 0.843 9 S 2.694 3.306 10 O -0.977 6.977 11 O -0.980 6.980 12 C -1.202 5.202 13 H 0.119 0.881 14 C -0.129 4.129 15 N -0.469 5.469 16 Si 0.905 3.095 17 H -0.200 1.200 18 H -0.203 1.203 19 H -0.197 1.197 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.855 -5.760 5.948 8.485 hybrid contribution -0.696 -1.081 1.331 1.851 sum -2.551 -6.842 7.279 10.311 Atomic orbital electron populations 1.22250 0.94020 1.03021 1.03330 1.22307 0.94923 0.95283 0.82799 0.90346 1.88343 1.70973 1.40549 1.29768 1.23363 0.94785 0.88720 0.95156 1.22996 0.96272 1.01470 0.95732 1.32093 1.07548 1.17389 1.15529 0.84339 1.04092 0.74683 0.76021 0.75832 1.93418 1.48341 1.71708 1.84245 1.93414 1.55470 1.72705 1.76366 1.30989 1.61797 1.08462 1.18957 0.88132 1.25950 0.90183 0.96884 0.99897 1.70744 1.36087 1.04325 1.35715 0.83425 0.77034 0.74512 0.74481 1.19998 1.20348 1.19737 0.91822 0.91460 0.90194 0.89461 0.92243 0.88557 0.88471 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.44 37.16 0.35 -2.22 15 2 C 0.11 1.87 3.79 -26.01 -0.10 1.77 15 3 H 0.08 1.44 7.77 -51.93 -0.40 1.04 15 4 O -0.38 -6.45 11.02 -35.23 -0.39 -6.84 15 5 C 0.06 0.82 7.78 38.19 0.30 1.11 15 6 C -0.13 -2.10 6.55 -24.48 -0.16 -2.26 15 7 C -0.62 -11.72 3.08 -24.78 -0.08 -11.80 15 8 H 0.14 2.33 7.85 -51.93 -0.41 1.93 15 9 S 2.51 62.95 3.44 -107.50 -0.37 62.58 15 10 O -0.98 -27.14 16.70 -57.54 -0.96 -28.10 15 11 O -0.98 -27.20 17.33 -57.54 -1.00 -28.19 15 12 C -1.07 -28.58 9.25 30.60 0.28 -28.30 15 13 H 0.10 2.42 7.81 -52.48 -0.41 2.01 15 14 C 0.09 2.53 5.46 -17.82 -0.10 2.43 15 15 N -0.84 -25.62 13.63 55.43 0.76 -24.87 15 16 Si 1.08 23.60 29.90 -169.99 -5.08 18.52 15 17 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.07 0.90 8.14 -51.92 -0.42 0.48 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 26 H 0.10 1.72 7.50 -51.93 -0.39 1.33 15 27 H 0.28 8.85 6.19 -40.82 -0.25 8.60 15 LS Contribution 244.65 15.07 3.69 3.69 Total: -1.00 -33.66 244.65 -6.05 -39.71 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.19 Total: 2.76 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 0.50 Total: -39.26 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.76 Total: -24.87 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -2.35 Total: -63.13 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.08 Total: 18.52 kcal Atomic # 16 Polarization: 62.95 SS G_CDS: -0.37 Total: 62.58 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.66 -6.05 -39.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235604253.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.207 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds