Wall clock time and date at job start Mon Mar 30 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.89746 * 2 1 4 4 O 1.43236 * 109.83181 * 120.93350 * 2 1 3 5 5 C 1.43644 * 109.97047 * 117.79902 * 4 2 1 6 6 C 1.54947 * 105.13715 * 24.43150 * 5 4 2 7 7 C 1.54383 * 109.83096 * 239.07144 * 2 1 3 8 8 H 1.08998 * 110.84362 * 337.52108 * 7 2 1 9 9 S 1.81399 * 110.85131 * 100.93672 * 7 2 1 10 10 O 1.42100 * 110.54228 * 68.37571 * 9 7 2 11 11 O 1.42100 * 110.54341 * 291.62689 * 9 7 2 12 12 C 1.76199 * 104.45040 * 180.02562 * 9 7 2 13 13 H 1.08005 * 119.99978 * 0.02562 * 12 9 7 14 14 C 1.37871 * 119.99882 * 180.02562 * 12 9 7 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 H 1.09000 * 109.47140 * 180.93293 * 1 2 3 21 21 H 1.09008 * 109.47045 * 300.93282 * 1 2 3 22 22 H 1.09000 * 109.47307 * 60.92794 * 1 2 3 23 23 H 1.09004 * 110.30855 * 143.34224 * 5 4 2 24 24 H 1.09003 * 110.31505 * 265.51624 * 5 4 2 25 25 H 1.08998 * 111.12670 * 205.63618 * 6 5 4 26 26 H 1.08996 * 111.12638 * 81.46740 * 6 5 4 27 27 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6926 1.1558 5 6 2.7746 -1.8444 0.7545 6 6 3.2730 -1.5221 -0.6768 7 6 2.0537 -0.7464 -1.2458 8 1 1.2998 -1.4322 -1.6325 9 16 2.5753 0.4252 -2.5287 10 8 3.7369 1.1321 -2.1159 11 8 1.4519 1.1112 -3.0640 12 6 3.1336 -0.5933 -3.8536 13 1 3.1029 -1.6687 -3.7580 14 6 3.6095 -0.0175 -5.0124 15 7 3.6473 1.2919 -5.1287 16 14 4.2020 -1.0974 -6.4168 17 1 5.6521 -1.3721 -6.2523 18 1 3.4512 -2.3785 -6.4069 19 1 3.9738 -0.3998 -7.7078 20 1 -0.3633 -1.0275 0.0167 21 1 -0.3633 0.5283 0.8816 22 1 -0.3634 0.4993 -0.8982 23 1 3.6210 -1.9925 1.4253 24 1 2.1400 -2.7306 0.7435 25 1 3.4571 -2.4348 -1.2435 26 1 4.1619 -0.8920 -0.6507 27 1 3.3400 1.8526 -4.3992 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235604253.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:02 Heat of formation + Delta-G solvation = -168.820475 kcal Electronic energy + Delta-G solvation = -13895.980469 eV Core-core repulsion = 11358.228766 eV Total energy + Delta-G solvation = -2537.751703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60089 -37.58584 -36.69183 -35.25605 -33.65593 -32.57732 -27.83400 -27.24952 -23.19983 -22.70480 -21.16074 -19.51181 -18.24595 -17.57799 -16.73061 -16.40451 -16.07417 -15.64148 -15.46081 -14.94511 -14.52901 -13.90569 -13.63686 -13.08673 -13.02312 -12.96806 -12.73358 -12.69773 -12.60833 -12.29353 -12.09606 -11.94655 -11.45772 -11.16607 -10.68777 -10.48261 -9.36149 -7.59710 -0.34546 1.46532 1.53057 1.75658 2.30152 2.53481 2.63700 2.83997 3.14630 3.18021 3.56917 3.76227 3.87769 4.07527 4.14478 4.26284 4.50816 4.59382 4.73986 4.79155 4.85215 4.96827 5.11477 5.40778 5.79915 5.83246 6.55668 8.00726 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045967 B = 0.010815 C = 0.009858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.983288 B = 2588.322353 C = 2839.601457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.060 0.940 4 O -0.385 6.385 5 C 0.056 3.944 6 C -0.134 4.134 7 C -0.593 4.593 8 H 0.168 0.832 9 S 2.491 3.509 10 O -1.022 7.022 11 O -1.023 7.023 12 C -1.082 5.082 13 H 0.128 0.872 14 C 0.031 3.969 15 N -0.879 5.879 16 Si 1.122 2.878 17 H -0.255 1.255 18 H -0.245 1.245 19 H -0.272 1.272 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 -9.925 7.943 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.040 3.960 3 H 0.078 0.922 4 O -0.305 6.305 5 C -0.020 4.020 6 C -0.173 4.173 7 C -0.704 4.704 8 H 0.186 0.814 9 S 2.684 3.316 10 O -1.019 7.019 11 O -1.020 7.020 12 C -1.216 5.216 13 H 0.146 0.854 14 C -0.179 4.179 15 N -0.509 5.509 16 Si 0.936 3.064 17 H -0.179 1.179 18 H -0.168 1.168 19 H -0.197 1.197 20 H 0.104 0.896 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.142 0.858 26 H 0.096 0.904 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.204 -8.820 6.765 11.332 hybrid contribution -0.604 -0.183 1.221 1.374 sum -2.807 -9.003 7.986 12.357 Atomic orbital electron populations 1.22267 0.91880 1.04660 1.03745 1.22373 0.96681 0.94479 0.82470 0.92218 1.88339 1.71406 1.41613 1.29117 1.23643 0.95998 0.88638 0.93733 1.23195 0.94386 1.01854 0.97820 1.31703 1.09601 1.15820 1.13268 0.81430 1.04037 0.73714 0.76906 0.76916 1.93361 1.49920 1.73600 1.85020 1.93357 1.55842 1.74567 1.78262 1.31449 1.60562 1.10186 1.19387 0.85414 1.27823 0.89474 0.97136 1.03451 1.70893 1.39038 1.05709 1.35273 0.83052 0.78148 0.73997 0.71183 1.17900 1.16835 1.19655 0.89606 0.89676 0.91245 0.86919 0.89140 0.85827 0.90360 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 9.44 71.98 0.68 -4.05 15 2 C 0.10 3.35 3.79 31.06 0.12 3.47 15 3 H 0.06 2.22 7.77 -2.39 -0.02 2.20 15 4 O -0.38 -11.97 11.02 -148.98 -1.64 -13.62 15 5 C 0.06 1.37 7.78 72.65 0.56 1.94 15 6 C -0.13 -4.06 6.55 32.05 0.21 -3.85 15 7 C -0.59 -21.17 3.08 31.86 0.10 -21.07 15 8 H 0.17 5.04 7.85 -2.39 -0.02 5.02 15 9 S 2.49 127.35 3.44 -56.49 -0.19 127.16 15 10 O -1.02 -59.04 16.70 -127.65 -2.13 -61.17 15 11 O -1.02 -58.75 17.33 -127.65 -2.21 -60.96 15 12 C -1.08 -57.53 9.25 67.73 0.63 -56.90 15 13 H 0.13 5.84 7.81 -2.91 -0.02 5.81 15 14 C 0.03 1.77 5.46 84.65 0.46 2.23 15 15 N -0.88 -55.47 13.63 21.45 0.29 -55.18 15 16 Si 1.12 45.98 29.90 68.60 2.05 48.03 15 17 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 18 H -0.25 -8.67 7.11 99.48 0.71 -7.96 15 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 20 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 23 H 0.11 2.21 8.14 -2.38 -0.02 2.19 15 24 H 0.09 1.72 8.14 -2.39 -0.02 1.71 15 25 H 0.12 3.04 8.14 -2.39 -0.02 3.02 15 26 H 0.08 2.68 7.50 -2.39 -0.02 2.66 15 27 H 0.26 17.28 6.19 -92.71 -0.57 16.71 15 Total: -1.00 -75.89 244.65 0.28 -75.61 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.35 Total: 18.36 kcal Atomic # 6 Polarization: -80.99 SS G_CDS: 2.76 Total: -78.23 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.29 Total: -55.18 kcal Atomic # 8 Polarization: -129.76 SS G_CDS: -5.99 Total: -135.75 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.05 Total: 48.03 kcal Atomic # 16 Polarization: 127.35 SS G_CDS: -0.19 Total: 127.16 kcal Total: -75.89 0.28 -75.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235604253.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.210 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds