Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40818 * 126.62888 * 2 1 4 4 C 1.34830 * 107.03794 * 180.26359 * 3 2 1 5 5 O 1.34192 * 108.67670 * 359.75349 * 4 3 2 6 6 C 1.34723 * 109.41416 * 359.97438 * 5 4 3 7 7 C 1.47762 * 125.93504 * 179.97438 * 6 5 4 8 8 N 1.31540 * 126.24021 * 179.97438 * 7 6 5 9 9 O 1.21268 * 110.47979 * 180.02562 * 8 7 6 10 10 C 1.34754 * 109.82065 * 0.02562 * 9 8 7 11 11 C 1.40364 * 126.64353 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99424 * 179.97438 * 11 10 9 13 13 C 1.40403 * 120.00430 * 359.97438 * 11 10 9 14 14 N 1.30537 * 119.99556 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47227 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46764 * 120.00044 * 15 13 11 18 18 H 1.48495 * 109.47061 * 239.99901 * 15 13 11 19 19 N 1.33147 * 106.70510 * 359.97438 * 10 9 8 20 20 H 1.08996 * 109.46959 * 270.16792 * 1 2 3 21 21 H 1.08997 * 109.47159 * 30.16678 * 1 2 3 22 22 H 1.09005 * 109.47094 * 150.16808 * 1 2 3 23 23 H 1.07991 * 126.48301 * 359.97438 * 3 2 1 24 24 H 1.07996 * 125.66162 * 179.71188 * 4 3 2 25 25 H 0.97005 * 119.99375 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3471 1.1301 0.0000 4 6 3.6174 0.6780 -0.0059 5 8 3.5960 -0.6637 -0.0041 6 6 2.3184 -1.0912 0.0036 7 6 1.8757 -2.5010 0.0074 8 7 0.6305 -2.9250 0.0154 9 8 0.5951 -4.1372 0.0170 10 6 1.8489 -4.6309 0.0106 11 6 2.2157 -5.9858 0.0097 12 1 3.2596 -6.2625 0.0038 13 6 1.2256 -6.9812 0.0163 14 7 -0.0362 -6.6466 0.0239 15 14 1.7138 -8.7843 0.0143 16 1 3.1945 -8.8961 0.0047 17 1 1.1749 -9.4443 1.2305 18 1 1.1601 -9.4457 -1.1944 19 7 2.6723 -3.5846 0.0042 20 1 -0.3633 0.0030 1.0276 21 1 -0.3633 0.8885 -0.5164 22 1 -0.3633 -0.8915 -0.5112 23 1 2.0334 2.1634 -0.0004 24 1 4.5047 1.2935 -0.0119 25 1 -0.7202 -7.3344 0.0288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235777451.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = 59.255616 kcal Electronic energy + Delta-G solvation = -14158.340117 eV Core-core repulsion = 11527.327335 eV Total energy + Delta-G solvation = -2631.012782 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.13702 -42.07956 -34.23834 -34.07094 -33.47431 -30.94851 -29.31690 -26.92685 -26.55342 -22.77210 -21.68412 -20.73598 -19.67275 -17.97685 -16.43096 -16.13649 -15.50731 -15.41635 -15.04877 -13.90849 -13.64889 -12.93415 -12.67559 -12.50201 -12.04298 -11.77941 -11.65818 -11.52708 -11.13530 -10.51903 -10.34027 -10.22386 -9.92471 -9.28463 -9.07965 -8.71890 -7.61674 -7.15850 -5.11588 1.78199 2.71324 2.80084 2.93796 3.01821 3.23760 3.34192 3.69710 4.05964 4.82899 4.95106 5.17928 5.20996 5.30062 5.79584 5.85047 6.12265 6.13974 6.30120 6.43029 6.56174 6.78226 6.88448 7.16715 7.51900 7.80742 7.98964 8.19054 8.36559 9.83008 10.17754 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.066247 B = 0.007070 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.560954 B = 3959.707793 C = 4367.117944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.155 4.155 3 C -0.213 4.213 4 C -0.044 4.044 5 O -0.157 6.157 6 C 0.093 3.907 7 C 0.221 3.779 8 N -0.435 5.435 9 O 0.056 5.944 10 C 0.304 3.696 11 C -0.411 4.411 12 H 0.116 0.884 13 C 0.070 3.930 14 N -0.761 5.761 15 Si 0.938 3.062 16 H -0.254 1.254 17 H -0.268 1.268 18 H -0.268 1.268 19 N -0.600 5.600 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.148 0.852 24 H 0.203 0.797 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 5.841 -0.059 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.159 4.159 3 C -0.232 4.232 4 C -0.113 4.113 5 O -0.050 6.050 6 C 0.041 3.959 7 C -0.048 4.048 8 N -0.164 5.164 9 O 0.005 5.995 10 C 0.115 3.885 11 C -0.448 4.448 12 H 0.134 0.866 13 C -0.155 4.155 14 N -0.388 5.388 15 Si 0.761 3.239 16 H -0.178 1.178 17 H -0.193 1.193 18 H -0.193 1.193 19 N -0.344 5.344 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.101 0.899 23 H 0.166 0.834 24 H 0.219 0.781 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.180 6.241 -0.060 6.352 hybrid contribution 0.134 -0.690 0.021 0.703 sum 1.314 5.551 -0.040 5.705 Atomic orbital electron populations 1.20202 0.88789 1.02771 1.02090 1.20364 0.97379 0.90989 1.07209 1.21552 0.92531 0.99464 1.09687 1.24033 0.99591 0.80791 1.06895 1.84106 1.28128 1.22075 1.70730 1.18457 0.80764 0.89721 1.06958 1.21798 0.87747 0.90857 1.04436 1.74698 1.18958 0.94110 1.28671 1.85540 1.31133 1.12086 1.70723 1.24151 0.77879 0.95617 0.90889 1.18667 0.96061 0.84450 1.45661 0.86615 1.26217 0.94131 1.03438 0.91756 1.69643 1.01080 1.37678 1.30415 0.85744 0.80531 0.78682 0.78959 1.17773 1.19263 1.19268 1.72559 1.29735 0.95862 1.36226 0.91751 0.92277 0.89946 0.83437 0.78065 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.93 36.00 0.36 -1.08 15 2 C -0.16 -3.02 6.19 -104.46 -0.65 -3.66 15 3 C -0.21 -3.33 10.84 -39.82 -0.43 -3.76 15 4 C -0.04 -0.68 12.08 29.52 0.36 -0.32 15 5 O -0.16 -3.28 10.67 4.85 0.05 -3.23 15 6 C 0.09 2.14 7.26 -36.50 -0.26 1.88 15 7 C 0.22 5.97 7.99 -156.42 -1.25 4.72 15 8 N -0.44 -11.89 10.26 31.46 0.32 -11.57 15 9 O 0.06 1.63 9.71 15.13 0.15 1.77 15 10 C 0.30 8.72 7.80 -16.33 -0.13 8.59 15 11 C -0.41 -10.77 9.48 -37.97 -0.36 -11.13 15 12 H 0.12 2.87 7.85 -52.49 -0.41 2.46 15 13 C 0.07 1.66 5.50 -17.29 -0.10 1.56 15 14 N -0.76 -18.93 12.05 55.57 0.67 -18.26 15 15 Si 0.94 17.24 29.56 -169.99 -5.03 12.22 15 16 H -0.25 -4.60 7.11 56.52 0.40 -4.20 15 17 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 18 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 19 N -0.60 -17.22 11.64 -11.66 -0.14 -17.36 15 20 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.08 1.64 6.58 -51.93 -0.34 1.30 15 23 H 0.15 1.76 8.06 -52.49 -0.42 1.34 15 24 H 0.20 2.04 8.06 -52.49 -0.42 1.62 15 25 H 0.29 6.40 8.29 -40.82 -0.34 6.06 15 LS Contribution 237.40 15.07 3.58 3.58 Total: -1.00 -30.74 237.40 -4.43 -35.17 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -1.58 Total: 0.87 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.46 Total: -3.19 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.86 Total: -47.18 kcal Atomic # 8 Polarization: -1.65 SS G_CDS: 0.20 Total: -1.45 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.74 -4.43 -35.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235777451.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.427 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds