Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40818 * 126.62888 * 2 1 4 4 C 1.34830 * 107.03794 * 180.26359 * 3 2 1 5 5 O 1.34192 * 108.67670 * 359.75349 * 4 3 2 6 6 C 1.34723 * 109.41416 * 359.97438 * 5 4 3 7 7 C 1.47762 * 125.93504 * 179.97438 * 6 5 4 8 8 N 1.31540 * 126.24021 * 179.97438 * 7 6 5 9 9 O 1.21268 * 110.47979 * 180.02562 * 8 7 6 10 10 C 1.34754 * 109.82065 * 0.02562 * 9 8 7 11 11 C 1.40364 * 126.64353 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99424 * 179.97438 * 11 10 9 13 13 C 1.40403 * 120.00430 * 359.97438 * 11 10 9 14 14 N 1.30537 * 119.99556 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00037 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47227 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46764 * 120.00044 * 15 13 11 18 18 H 1.48495 * 109.47061 * 239.99901 * 15 13 11 19 19 N 1.33147 * 106.70510 * 359.97438 * 10 9 8 20 20 H 1.08996 * 109.46959 * 270.16792 * 1 2 3 21 21 H 1.08997 * 109.47159 * 30.16678 * 1 2 3 22 22 H 1.09005 * 109.47094 * 150.16808 * 1 2 3 23 23 H 1.07991 * 126.48301 * 359.97438 * 3 2 1 24 24 H 1.07996 * 125.66162 * 179.71188 * 4 3 2 25 25 H 0.97005 * 119.99375 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3471 1.1301 0.0000 4 6 3.6174 0.6780 -0.0059 5 8 3.5960 -0.6637 -0.0041 6 6 2.3184 -1.0912 0.0036 7 6 1.8757 -2.5010 0.0074 8 7 0.6305 -2.9250 0.0154 9 8 0.5951 -4.1372 0.0170 10 6 1.8489 -4.6309 0.0106 11 6 2.2157 -5.9858 0.0097 12 1 3.2596 -6.2625 0.0038 13 6 1.2256 -6.9812 0.0163 14 7 -0.0362 -6.6466 0.0239 15 14 1.7138 -8.7843 0.0143 16 1 3.1945 -8.8961 0.0047 17 1 1.1749 -9.4443 1.2305 18 1 1.1601 -9.4457 -1.1944 19 7 2.6723 -3.5846 0.0042 20 1 -0.3633 0.0030 1.0276 21 1 -0.3633 0.8885 -0.5164 22 1 -0.3633 -0.8915 -0.5112 23 1 2.0334 2.1634 -0.0004 24 1 4.5047 1.2935 -0.0119 25 1 -0.7202 -7.3344 0.0288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235777451.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = 36.806998 kcal Electronic energy + Delta-G solvation = -14159.313562 eV Core-core repulsion = 11527.327335 eV Total energy + Delta-G solvation = -2631.986227 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.13404 -43.52604 -36.16070 -35.92329 -35.10415 -32.78909 -30.84025 -28.60284 -28.41481 -24.53514 -23.61086 -22.18566 -21.36583 -19.72118 -18.09723 -18.03458 -17.35381 -17.01229 -16.75048 -15.65063 -15.22459 -14.42334 -14.07102 -13.75897 -13.71924 -13.53131 -13.36235 -13.11310 -12.64622 -12.36174 -12.20553 -11.95058 -11.66533 -11.15994 -10.66740 -10.58786 -9.23066 -9.00250 -7.17939 0.16712 1.00517 1.41014 1.45648 1.63248 1.67852 1.78161 2.15054 2.18090 2.96872 3.09130 3.38608 3.84516 3.95860 4.14422 4.61369 4.65943 4.75014 4.79268 4.89801 5.05773 5.12902 5.33991 5.58770 5.76986 5.96401 6.08076 6.22062 6.37958 8.00596 8.13504 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.066247 B = 0.007070 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.560954 B = 3959.707793 C = 4367.117944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.136 4.136 3 C -0.214 4.214 4 C -0.016 4.016 5 O -0.184 6.184 6 C 0.018 3.982 7 C 0.225 3.775 8 N -0.454 5.454 9 O 0.024 5.976 10 C 0.273 3.727 11 C -0.426 4.426 12 H 0.123 0.877 13 C 0.029 3.971 14 N -0.790 5.790 15 Si 1.025 2.975 16 H -0.249 1.249 17 H -0.255 1.255 18 H -0.255 1.255 19 N -0.637 5.637 20 H 0.070 0.930 21 H 0.098 0.902 22 H 0.051 0.949 23 H 0.194 0.806 24 H 0.259 0.741 25 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 6.639 -0.057 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C -0.233 4.233 4 C -0.084 4.084 5 O -0.079 6.079 6 C -0.033 4.033 7 C -0.045 4.045 8 N -0.188 5.188 9 O -0.021 6.021 10 C 0.085 3.915 11 C -0.463 4.463 12 H 0.141 0.859 13 C -0.194 4.194 14 N -0.417 5.417 15 Si 0.841 3.159 16 H -0.172 1.172 17 H -0.179 1.179 18 H -0.179 1.179 19 N -0.383 5.383 20 H 0.089 0.911 21 H 0.117 0.883 22 H 0.070 0.930 23 H 0.211 0.789 24 H 0.275 0.725 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.831 7.020 -0.058 7.255 hybrid contribution -0.054 -0.763 0.018 0.765 sum 1.777 6.257 -0.040 6.505 Atomic orbital electron populations 1.20274 0.87948 1.03148 1.02602 1.20889 0.98262 0.91415 1.03530 1.22021 0.91593 1.00327 1.09346 1.25313 1.01894 0.78943 1.02241 1.84072 1.27437 1.24907 1.71513 1.18429 0.82516 0.88796 1.13569 1.22453 0.87426 0.92591 1.02016 1.74604 1.19408 0.93608 1.31223 1.85464 1.31331 1.12870 1.72462 1.24739 0.78166 0.96712 0.91861 1.19227 0.97334 0.84413 1.45364 0.85880 1.27421 0.93398 1.08356 0.90186 1.69689 1.02590 1.40342 1.29079 0.84521 0.80422 0.71174 0.79761 1.17156 1.17873 1.17886 1.72510 1.30634 0.96680 1.38431 0.91100 0.88313 0.93024 0.78851 0.72511 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.84 9.93 71.23 0.71 -2.14 15 2 C -0.14 -5.16 6.19 -19.76 -0.12 -5.28 15 3 C -0.21 -5.85 10.84 22.12 0.24 -5.61 15 4 C -0.02 -0.43 12.08 67.04 0.81 0.38 15 5 O -0.18 -7.64 10.67 -5.57 -0.06 -7.70 15 6 C 0.02 0.84 7.26 24.27 0.18 1.02 15 7 C 0.23 12.83 7.99 137.10 1.10 13.93 15 8 N -0.45 -26.36 10.26 -55.89 -0.57 -26.94 15 9 O 0.02 1.49 9.71 64.22 0.62 2.11 15 10 C 0.27 16.50 7.80 85.06 0.66 17.16 15 11 C -0.43 -23.11 9.48 23.31 0.22 -22.89 15 12 H 0.12 6.26 7.85 -2.91 -0.02 6.24 15 13 C 0.03 1.38 5.50 85.41 0.47 1.85 15 14 N -0.79 -39.98 12.05 21.90 0.26 -39.71 15 15 Si 1.03 34.35 29.56 68.60 2.03 36.38 15 16 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 17 H -0.25 -8.00 7.11 99.48 0.71 -7.29 15 18 H -0.25 -8.00 7.11 99.48 0.71 -7.30 15 19 N -0.64 -38.74 11.64 -305.02 -3.55 -42.29 15 20 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15 22 H 0.05 2.11 6.58 -2.38 -0.02 2.09 15 23 H 0.19 3.43 8.06 -2.92 -0.02 3.41 15 24 H 0.26 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.31 13.45 8.29 -92.70 -0.77 12.68 15 Total: -1.00 -72.96 237.40 4.22 -68.74 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.23 Total: 10.99 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 4.26 Total: -1.58 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.86 Total: -108.94 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: 0.56 Total: -5.59 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Total: -72.96 4.22 -68.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235777451.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.547 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds