Wall clock time and date at job start Mon Mar 30 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47442 * 270.00381 * 3 2 1 5 5 H 1.48507 * 109.47119 * 30.00147 * 3 2 1 6 6 H 1.48498 * 109.47428 * 150.00279 * 3 2 1 7 7 C 1.37875 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00160 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00131 * 179.97438 * 7 2 1 10 10 C 1.50692 * 109.47309 * 179.97438 * 9 7 2 11 11 N 1.30976 * 126.43127 * 90.02440 * 10 9 7 12 12 C 1.35242 * 105.58371 * 180.02562 * 11 10 9 13 13 C 1.48311 * 126.42415 * 179.97438 * 12 11 10 14 14 C 1.46758 * 127.12318 * 179.70876 * 13 12 11 15 15 C 1.34340 * 106.00666 * 179.86718 * 14 13 12 16 16 O 1.34173 * 108.99748 * 0.39962 * 15 14 13 17 17 C 1.33971 * 110.77971 * 359.73123 * 16 15 14 18 18 N 1.30833 * 107.15574 * 359.97438 * 12 11 10 19 19 O 1.21293 * 110.08627 * 359.97438 * 18 12 11 20 20 H 0.97004 * 119.99697 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47042 * 59.98997 * 9 7 2 22 22 H 1.09000 * 109.46978 * 299.99730 * 9 7 2 23 23 H 1.07996 * 126.99543 * 0.02562 * 14 13 12 24 24 H 1.07996 * 125.49759 * 180.09501 * 15 14 13 25 25 H 1.08001 * 125.76832 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 7 4.2732 -3.3482 -1.0547 12 6 4.6939 -4.5399 -0.5733 13 6 5.1091 -5.7165 -1.3751 14 6 5.5734 -7.0137 -0.8695 15 6 5.8320 -7.7630 -1.9541 16 8 5.5769 -7.0401 -3.0553 17 6 5.1440 -5.8148 -2.7298 18 7 4.6661 -4.4603 0.7323 19 8 4.2793 -3.3628 1.0745 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6802 0.8887 22 1 3.8745 -0.6800 -0.8912 23 1 5.6824 -7.3070 0.1642 24 1 6.1921 -8.7811 -1.9416 25 1 4.8689 -5.0367 -3.4264 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236200143.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:01 Heat of formation + Delta-G solvation = 78.563063 kcal Electronic energy + Delta-G solvation = -13756.778012 eV Core-core repulsion = 11126.602464 eV Total energy + Delta-G solvation = -2630.175548 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.81679 -42.42177 -35.46422 -34.08906 -32.76508 -31.65723 -29.69027 -29.02186 -24.35358 -23.84448 -22.06375 -21.00803 -20.14697 -17.88383 -17.66636 -16.70314 -16.40120 -15.99481 -15.03399 -14.62755 -13.81485 -13.46524 -12.91880 -12.66427 -12.47741 -12.31084 -11.68814 -11.59258 -11.16547 -10.75620 -10.45653 -10.36641 -9.84662 -9.60160 -9.14426 -8.77447 -8.47200 -6.25786 -4.30447 1.34264 1.90584 2.29918 2.95361 3.19113 3.26226 3.27356 3.34315 3.62803 4.00486 4.24349 4.38951 4.79807 5.06264 5.20635 5.29665 5.65687 5.91539 6.01018 6.21399 6.36008 6.47837 6.59427 6.80429 7.01424 7.29815 8.21406 8.73626 8.80094 9.28044 10.86341 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.006041 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.582141 B = 4634.067721 C = 4769.280459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.069 3.931 10 C 0.247 3.753 11 N -0.500 5.500 12 C 0.230 3.770 13 C -0.116 4.116 14 C -0.185 4.185 15 C -0.041 4.041 16 O -0.178 6.178 17 C 0.024 3.976 18 N -0.396 5.396 19 O 0.068 5.932 20 H 0.270 0.730 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.156 0.844 24 H 0.207 0.793 25 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.206 -9.383 -3.207 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.030 3.970 10 C 0.029 3.971 11 N -0.233 5.233 12 C -0.040 4.040 13 C -0.119 4.119 14 C -0.205 4.205 15 C -0.108 4.108 16 O -0.074 6.074 17 C -0.047 4.047 18 N -0.108 5.108 19 O 0.012 5.988 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.173 0.827 24 H 0.224 0.776 25 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 11.331 -10.095 -3.373 15.546 hybrid contribution 0.111 1.030 0.335 1.089 sum 11.443 -9.064 -3.038 14.911 Atomic orbital electron populations 1.69865 1.06280 1.27550 1.48668 1.24862 0.94835 0.98984 0.93772 0.86803 0.80430 0.83315 0.79050 1.19653 1.20711 1.18570 1.20619 0.86682 0.95546 1.53951 0.90439 1.18590 0.98321 0.79716 1.00350 1.29395 0.90165 0.98561 0.79026 1.72025 1.20582 1.01694 1.29047 1.22852 1.00574 0.93005 0.87585 1.18633 1.09442 0.91857 0.91959 1.22778 1.05087 0.92278 1.00366 1.23863 1.05766 0.98102 0.83022 1.83890 1.65522 1.22755 1.35202 1.24241 0.99250 0.85730 0.95456 1.74809 1.20309 1.00898 1.14745 1.85250 1.60088 1.17182 1.36326 0.92035 0.92366 0.91830 0.82678 0.77603 0.76609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.17 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 3 Si 0.88 19.66 27.47 -169.99 -4.67 14.99 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.26 -5.43 6.54 56.52 0.37 -5.06 15 7 C -0.53 -14.37 9.65 -34.44 -0.33 -14.71 15 8 H 0.08 2.35 7.98 -52.49 -0.42 1.93 15 9 C 0.07 1.56 4.67 -29.04 -0.14 1.43 15 10 C 0.25 5.46 7.68 -12.98 -0.10 5.36 15 11 N -0.50 -10.82 11.58 -9.86 -0.11 -10.93 15 12 C 0.23 4.64 8.08 -156.09 -1.26 3.38 15 13 C -0.12 -1.91 6.33 -103.16 -0.65 -2.57 15 14 C -0.18 -2.48 11.15 -37.52 -0.42 -2.90 15 15 C -0.04 -0.44 12.04 29.36 0.35 -0.08 15 16 O -0.18 -2.18 10.54 6.94 0.07 -2.11 15 17 C 0.02 0.34 12.07 29.88 0.36 0.70 15 18 N -0.40 -8.29 12.21 30.99 0.38 -7.91 15 19 O 0.07 1.47 11.29 18.03 0.20 1.67 15 20 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.06 1.22 7.20 -51.93 -0.37 0.84 15 22 H 0.06 1.36 7.57 -51.93 -0.39 0.97 15 23 H 0.16 1.91 8.06 -52.49 -0.42 1.48 15 24 H 0.21 1.22 8.06 -52.49 -0.42 0.80 15 25 H 0.22 2.56 8.06 -52.49 -0.42 2.13 15 LS Contribution 240.17 15.07 3.62 3.62 Total: -1.00 -30.94 240.17 -3.64 -34.58 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -1.62 Total: -1.41 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.28 Total: -7.33 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 1.04 Total: -44.02 kcal Atomic # 8 Polarization: -0.72 SS G_CDS: 0.28 Total: -0.44 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.94 -3.64 -34.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236200143.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.146 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds