Wall clock time and date at job start Mon Mar 30 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47442 * 270.00381 * 3 2 1 5 5 H 1.48507 * 109.47119 * 30.00147 * 3 2 1 6 6 H 1.48498 * 109.47428 * 150.00279 * 3 2 1 7 7 C 1.37875 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00160 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00131 * 179.97438 * 7 2 1 10 10 C 1.50692 * 109.47309 * 179.97438 * 9 7 2 11 11 N 1.30976 * 126.43127 * 90.02440 * 10 9 7 12 12 C 1.35242 * 105.58371 * 180.02562 * 11 10 9 13 13 C 1.48311 * 126.42415 * 179.97438 * 12 11 10 14 14 C 1.46758 * 127.12318 * 179.70876 * 13 12 11 15 15 C 1.34340 * 106.00666 * 179.86718 * 14 13 12 16 16 O 1.34173 * 108.99748 * 0.39962 * 15 14 13 17 17 C 1.33971 * 110.77971 * 359.73123 * 16 15 14 18 18 N 1.30833 * 107.15574 * 359.97438 * 12 11 10 19 19 O 1.21293 * 110.08627 * 359.97438 * 18 12 11 20 20 H 0.97004 * 119.99697 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47042 * 59.98997 * 9 7 2 22 22 H 1.09000 * 109.46978 * 299.99730 * 9 7 2 23 23 H 1.07996 * 126.99543 * 0.02562 * 14 13 12 24 24 H 1.07996 * 125.49759 * 180.09501 * 15 14 13 25 25 H 1.08001 * 125.76832 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 7 4.2732 -3.3482 -1.0547 12 6 4.6939 -4.5399 -0.5733 13 6 5.1091 -5.7165 -1.3751 14 6 5.5734 -7.0137 -0.8695 15 6 5.8320 -7.7630 -1.9541 16 8 5.5769 -7.0401 -3.0553 17 6 5.1440 -5.8148 -2.7298 18 7 4.6661 -4.4603 0.7323 19 8 4.2793 -3.3628 1.0745 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6802 0.8887 22 1 3.8745 -0.6800 -0.8912 23 1 5.6824 -7.3070 0.1642 24 1 6.1921 -8.7811 -1.9416 25 1 4.8689 -5.0367 -3.4264 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236200143.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:01 Heat of formation + Delta-G solvation = 56.042706 kcal Electronic energy + Delta-G solvation = -13757.754568 eV Core-core repulsion = 11126.602464 eV Total energy + Delta-G solvation = -2631.152104 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -46.44751 -43.43739 -37.06211 -35.86364 -34.37226 -33.16518 -30.88960 -30.71371 -25.92850 -25.62504 -23.58011 -22.09057 -21.50114 -19.49571 -19.09398 -18.60174 -17.89540 -17.00566 -16.56405 -16.10301 -15.51525 -14.74872 -14.47219 -14.11935 -13.91042 -13.59230 -13.28337 -13.21113 -13.00673 -12.47935 -12.13415 -12.04656 -11.75064 -11.25041 -10.83140 -10.42669 -9.64638 -8.34801 -6.47274 -0.07454 0.60517 1.06672 1.45607 1.46989 1.57803 1.91137 1.92150 2.01361 2.35578 2.63511 2.93987 3.04404 3.79208 4.05188 4.08731 4.46226 4.68809 4.69912 4.81719 4.88674 4.98091 5.10725 5.30191 5.31530 5.99523 6.07814 6.55332 7.14948 7.16044 8.81509 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.006041 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.582141 B = 4634.067721 C = 4769.280459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.020 3.980 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.229 1.229 7 C -0.542 4.542 8 H 0.024 0.976 9 C 0.075 3.925 10 C 0.236 3.764 11 N -0.511 5.511 12 C 0.235 3.765 13 C -0.165 4.165 14 C -0.212 4.212 15 C -0.009 4.009 16 O -0.173 6.173 17 C 0.041 3.959 18 N -0.410 5.410 19 O 0.057 5.943 20 H 0.274 0.726 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.160 0.840 24 H 0.259 0.741 25 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.386 -9.550 -4.063 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.179 4.179 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.151 1.151 7 C -0.580 4.580 8 H 0.042 0.958 9 C 0.036 3.964 10 C 0.017 3.983 11 N -0.245 5.245 12 C -0.035 4.035 13 C -0.168 4.168 14 C -0.231 4.231 15 C -0.075 4.075 16 O -0.068 6.068 17 C -0.031 4.031 18 N -0.124 5.124 19 O 0.004 5.996 20 H 0.083 0.917 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.177 0.823 24 H 0.275 0.725 25 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 13.527 -10.278 -4.215 17.504 hybrid contribution -0.601 0.876 0.537 1.190 sum 12.926 -9.402 -3.678 16.402 Atomic orbital electron populations 1.70029 1.08646 1.29027 1.50205 1.25929 0.95683 1.03567 0.92759 0.85599 0.79998 0.76946 0.79869 1.18545 1.20714 1.15113 1.20747 0.89275 0.93769 1.54249 0.95796 1.18508 0.95078 0.80567 1.02233 1.29358 0.90717 0.98709 0.79502 1.72007 1.20889 1.02451 1.29188 1.23450 0.98952 0.93464 0.87596 1.18965 1.12476 0.92228 0.93153 1.22948 1.06896 0.91612 1.01693 1.24758 1.02402 0.99028 0.81272 1.83947 1.64891 1.22144 1.35785 1.24476 0.97536 0.86447 0.94667 1.74775 1.21577 1.00669 1.15381 1.85222 1.60528 1.17479 1.36337 0.91719 0.89886 0.89898 0.82273 0.72547 0.75252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 13.96 21.45 0.30 -56.29 15 2 C 0.02 1.09 5.47 84.65 0.46 1.55 15 3 Si 0.96 39.51 27.47 68.60 1.88 41.40 15 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 6 H -0.23 -8.21 6.54 99.48 0.65 -7.56 15 7 C -0.54 -30.14 9.65 25.60 0.25 -29.89 15 8 H 0.02 1.53 7.98 -2.91 -0.02 1.51 15 9 C 0.07 3.32 4.67 29.10 0.14 3.46 15 10 C 0.24 10.50 7.68 88.35 0.68 11.18 15 11 N -0.51 -22.25 11.58 -302.37 -3.50 -25.75 15 12 C 0.24 9.55 8.08 137.24 1.11 10.66 15 13 C -0.16 -5.32 6.33 -18.92 -0.12 -5.44 15 14 C -0.21 -5.30 11.15 23.61 0.26 -5.04 15 15 C -0.01 -0.16 12.04 66.93 0.81 0.65 15 16 O -0.17 -3.69 10.54 1.93 0.02 -3.67 15 17 C 0.04 1.05 12.07 67.27 0.81 1.86 15 18 N -0.41 -17.41 12.21 -58.99 -0.72 -18.13 15 19 O 0.06 2.52 11.29 74.58 0.84 3.36 15 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 21 H 0.08 3.27 7.20 -2.39 -0.02 3.25 15 22 H 0.08 3.37 7.57 -2.39 -0.02 3.35 15 23 H 0.16 3.74 8.06 -2.91 -0.02 3.71 15 24 H 0.26 1.61 8.06 -2.91 -0.02 1.58 15 25 H 0.23 5.08 8.06 -2.91 -0.02 5.05 15 Total: -1.00 -69.73 240.17 4.39 -65.34 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.17 Total: 4.77 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 4.39 Total: -11.02 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.92 Total: -100.17 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: 0.86 Total: -0.32 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.88 Total: 41.40 kcal Total: -69.73 4.39 -65.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236200143.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.385 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds