Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48503 * 109.46780 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47161 * 299.99847 * 3 2 1 6 6 H 1.48495 * 109.47015 * 60.00514 * 3 2 1 7 7 C 1.37877 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99757 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.87210 * 23.82127 * 9 7 2 11 11 O 1.43743 * 109.87644 * 144.82706 * 9 7 2 12 12 C 1.44383 * 106.97637 * 145.93513 * 11 9 7 13 13 C 1.54991 * 103.49006 * 319.94144 * 12 11 9 14 14 C 1.54090 * 109.87812 * 262.65738 * 9 7 2 15 15 H 1.08999 * 110.48883 * 119.87250 * 14 9 7 16 16 Br 1.96604 * 110.49146 * 357.22493 * 14 9 7 17 17 H 0.97006 * 120.00161 * 359.97438 * 1 2 3 18 18 H 1.09001 * 110.61588 * 78.43826 * 12 11 9 19 19 H 1.08994 * 110.62032 * 201.27975 * 12 11 9 20 20 H 1.08997 * 110.90654 * 155.21672 * 13 12 11 21 21 H 1.08995 * 110.90916 * 278.78837 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.2534 -2.3510 -0.4141 11 8 1.9632 -3.4748 -0.7797 12 6 1.7450 -4.7566 -0.1520 13 6 1.8268 -4.4362 1.3622 14 6 1.1499 -3.0458 1.4366 15 1 0.1061 -3.1452 1.7345 16 35 2.1158 -1.8762 2.6873 17 1 -0.4851 0.8401 0.0004 18 1 0.7603 -5.1471 -0.4090 19 1 2.5238 -5.4626 -0.4400 20 1 1.2718 -5.1707 1.9458 21 1 2.8640 -4.3826 1.6930 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238017527.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -67.272714 kcal Electronic energy + Delta-G solvation = -8855.647804 eV Core-core repulsion = 6969.995056 eV Total energy + Delta-G solvation = -1885.652748 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 219.984 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.88240 -34.88725 -33.13749 -30.76154 -29.35972 -26.37912 -23.06317 -21.66635 -18.69972 -17.19948 -16.86746 -15.89622 -15.47478 -14.45815 -14.18086 -13.48690 -12.88805 -12.76760 -12.51898 -12.40798 -12.01203 -11.65596 -11.30949 -10.70934 -10.39808 -10.20879 -9.93342 -8.17916 -6.19657 1.22613 1.39848 1.42232 1.53524 2.42423 3.03207 3.56386 3.77821 4.16339 4.21793 4.50950 4.53172 4.90826 4.94838 5.14573 5.30947 5.72079 6.03480 6.50336 6.85175 7.42921 8.91092 Molecular weight = 219.98amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.019409 C = 0.014432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.392168 B = 1442.268219 C = 1939.711600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.189 3.811 10 H 0.033 0.967 11 O -0.409 6.409 12 C 0.037 3.963 13 C -0.137 4.137 14 C -0.063 4.063 15 H 0.091 0.909 16 Br -0.156 7.156 17 H 0.265 0.735 18 H 0.063 0.937 19 H 0.109 0.891 20 H 0.109 0.891 21 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 -6.793 5.318 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.132 3.868 10 H 0.051 0.949 11 O -0.330 6.330 12 C -0.040 4.040 13 C -0.176 4.176 14 C -0.160 4.160 15 H 0.109 0.891 16 Br -0.076 7.076 17 H 0.074 0.926 18 H 0.081 0.919 19 H 0.127 0.873 20 H 0.127 0.873 21 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.610 -6.226 5.562 8.747 hybrid contribution -0.237 0.720 -0.147 0.772 sum 2.373 -5.506 5.415 8.079 Atomic orbital electron populations 1.69971 1.07078 1.27678 1.50919 1.25382 0.95343 1.01660 0.93730 0.85723 0.79547 0.80214 0.77807 1.19135 1.20366 1.20207 1.21046 0.93175 0.90095 1.50010 0.92899 1.20563 0.93135 0.87382 0.85699 0.94940 1.88917 1.74120 1.17222 1.52728 1.23668 1.01917 0.87330 0.91085 1.23385 1.02034 0.93875 0.98270 1.26323 0.98879 0.94592 0.96230 0.89064 1.97046 1.78701 1.72886 1.58962 0.92575 0.91854 0.87308 0.87307 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.47 12.79 21.45 0.27 -52.20 14 2 C 0.04 2.16 5.35 84.65 0.45 2.61 14 3 Si 0.94 44.38 29.54 68.60 2.03 46.40 14 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 14 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 14 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 14 7 C -0.51 -27.95 6.22 25.60 0.16 -27.80 14 8 H 0.05 3.03 7.81 -2.92 -0.02 3.01 14 9 C 0.19 9.63 3.56 30.22 0.11 9.74 14 10 H 0.03 1.86 7.29 -2.39 -0.02 1.84 14 11 O -0.41 -19.42 11.17 -148.98 -1.66 -21.09 14 12 C 0.04 1.25 7.72 72.66 0.56 1.81 14 13 C -0.14 -4.46 6.76 31.90 0.22 -4.25 14 14 C -0.06 -2.65 4.11 31.58 0.13 -2.52 14 15 H 0.09 3.73 8.14 -2.39 -0.02 3.71 14 16 Br -0.16 -6.71 30.86 -20.37 -0.63 -7.33 14 17 H 0.27 14.41 8.31 -92.70 -0.77 13.64 14 18 H 0.06 1.93 8.14 -2.39 -0.02 1.91 14 19 H 0.11 2.99 8.14 -2.39 -0.02 2.97 14 20 H 0.11 2.72 8.14 -2.39 -0.02 2.70 14 21 H 0.08 2.65 7.84 -2.39 -0.02 2.63 14 Total: -1.00 -60.83 203.21 2.85 -57.98 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: 1.21 Total: -3.36 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 1.63 Total: -20.41 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.27 Total: -52.20 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.66 Total: -21.09 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 35 Polarization: -6.71 SS G_CDS: -0.63 Total: -7.33 kcal Total: -60.83 2.85 -57.98 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238017527.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.292 kcal (2) G-P(sol) polarization free energy of solvation -60.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds