Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.86966 * 59.55758 * 9 7 2 11 11 O 1.43744 * 109.87812 * 298.54540 * 9 7 2 12 12 C 1.44384 * 106.97128 * 214.06577 * 11 9 7 13 13 C 1.54993 * 103.49299 * 40.06101 * 12 11 9 14 14 C 1.54104 * 109.87340 * 180.71260 * 9 7 2 15 15 H 1.09001 * 110.49068 * 2.77699 * 14 9 7 16 16 Br 1.96598 * 110.48734 * 240.12920 * 14 9 7 17 17 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 18 18 H 1.08993 * 110.61669 * 158.56411 * 12 11 9 19 19 H 1.09006 * 110.61676 * 281.39821 * 12 11 9 20 20 H 1.08994 * 110.90933 * 81.17324 * 13 12 11 21 21 H 1.08998 * 110.90707 * 204.77988 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6163 -2.5597 -0.8858 11 8 0.4467 -2.6002 1.1854 12 6 0.4224 -3.9942 1.5605 13 6 1.8753 -4.4652 1.2967 14 6 2.2440 -3.6775 0.0159 15 1 3.2691 -3.3117 0.0748 16 35 2.0039 -4.8036 -1.5776 17 1 -0.4849 0.8400 0.0004 18 1 0.1690 -4.1035 2.6150 19 1 -0.2818 -4.5469 0.9385 20 1 2.5295 -4.1906 2.1240 21 1 1.9091 -5.5395 1.1158 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238017685.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -71.412032 kcal Electronic energy + Delta-G solvation = -8771.191393 eV Core-core repulsion = 6885.359150 eV Total energy + Delta-G solvation = -1885.832243 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 219.984 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.83213 -34.73949 -33.31588 -30.72468 -29.88590 -26.27083 -23.23373 -21.56018 -19.01192 -16.90888 -16.55949 -16.03568 -15.78812 -14.37333 -14.25477 -13.53558 -12.92115 -12.85746 -12.48618 -12.15184 -12.04906 -11.83381 -11.32078 -10.76319 -10.70664 -10.56019 -10.05355 -8.18392 -6.40713 0.79093 1.42177 1.42629 1.55323 2.39892 3.04414 3.55252 3.59627 4.07478 4.24642 4.46161 4.51400 4.87192 4.93888 5.09075 5.35123 5.67364 6.01954 6.44300 6.86350 7.35402 8.89992 Molecular weight = 219.98amu Principal moments of inertia in cm(-1) A = 0.047631 B = 0.012204 C = 0.010728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.705664 B = 2293.707934 C = 2609.434913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.210 3.790 10 H 0.008 0.992 11 O -0.390 6.390 12 C 0.027 3.973 13 C -0.134 4.134 14 C -0.059 4.059 15 H 0.111 0.889 16 Br -0.172 7.172 17 H 0.264 0.736 18 H 0.100 0.900 19 H 0.049 0.951 20 H 0.097 0.903 21 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -9.394 0.047 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.153 3.847 10 H 0.026 0.974 11 O -0.310 6.310 12 C -0.050 4.050 13 C -0.172 4.172 14 C -0.154 4.154 15 H 0.129 0.871 16 Br -0.092 7.092 17 H 0.073 0.927 18 H 0.118 0.882 19 H 0.067 0.933 20 H 0.116 0.884 21 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.315 -9.508 -0.394 10.449 hybrid contribution 0.223 0.955 0.101 0.986 sum 4.538 -8.553 -0.292 9.687 Atomic orbital electron populations 1.70184 1.07840 1.27663 1.48230 1.25969 0.95627 1.03268 0.93038 0.85407 0.79248 0.78633 0.77733 1.18280 1.20235 1.20526 1.21568 0.93197 0.91060 1.53685 0.91155 1.20412 0.87023 0.92052 0.85199 0.97439 1.89220 1.72331 1.23449 1.45986 1.23652 0.95797 0.84405 1.01116 1.23361 0.97819 1.00703 0.95364 1.26228 1.04517 0.94965 0.89732 0.87080 1.97210 1.98424 1.69499 1.44111 0.92746 0.88162 0.93286 0.88439 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.60 12.92 21.45 0.28 -54.32 14 2 C 0.02 1.33 5.41 84.66 0.46 1.78 14 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 14 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 14 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 14 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 7 C -0.56 -30.99 8.78 25.60 0.22 -30.77 14 8 H 0.07 3.71 7.33 -2.91 -0.02 3.69 14 9 C 0.21 10.80 2.98 30.22 0.09 10.89 14 10 H 0.01 0.46 7.63 -2.39 -0.02 0.44 14 11 O -0.39 -20.46 10.68 -148.98 -1.59 -22.05 14 12 C 0.03 1.04 7.72 72.66 0.56 1.60 14 13 C -0.13 -4.37 6.76 31.90 0.22 -4.16 14 14 C -0.06 -2.32 3.74 31.59 0.12 -2.20 14 15 H 0.11 4.32 7.40 -2.39 -0.02 4.31 14 16 Br -0.17 -6.11 33.01 -20.37 -0.67 -6.79 14 17 H 0.26 14.96 8.31 -92.71 -0.77 14.19 14 18 H 0.10 3.23 8.14 -2.39 -0.02 3.21 14 19 H 0.05 1.80 8.14 -2.38 -0.02 1.78 14 20 H 0.10 2.90 8.14 -2.39 -0.02 2.88 14 21 H 0.10 2.80 7.83 -2.39 -0.02 2.78 14 Total: -1.00 -63.59 205.79 2.92 -60.66 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 1.22 Total: -0.23 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 1.67 Total: -22.86 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.28 Total: -54.32 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.59 Total: -22.05 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 35 Polarization: -6.11 SS G_CDS: -0.67 Total: -6.79 kcal Total: -63.59 2.92 -60.66 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238017685.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.750 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds