Wall clock time and date at job start Mon Mar 30 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 H 1.07993 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46803 * 60.00539 * 9 7 5 11 11 H 1.48499 * 109.47065 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00184 * 9 7 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 C 1.38233 * 120.00099 * 269.72682 * 15 14 13 17 17 C 1.38239 * 119.99655 * 179.76882 * 16 15 14 18 18 C 1.38230 * 120.00228 * 0.50243 * 17 16 15 19 19 C 1.38238 * 119.99995 * 359.75228 * 18 17 16 20 20 C 1.38238 * 120.00072 * 359.97438 * 19 18 17 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99995 * 38.95403 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.08003 * 119.99927 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.99431 * 180.23215 * 17 16 15 32 32 H 1.07997 * 120.00220 * 179.73036 * 18 17 16 33 33 H 1.08002 * 119.99952 * 179.97438 * 19 18 17 34 34 H 1.07991 * 120.00062 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8378 -3.2993 9 14 6.0921 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2269 11 1 6.5871 -1.7613 -3.6490 12 1 6.4845 0.3698 -2.4971 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5872 -0.5217 3.5561 16 6 1.6938 -1.1471 4.4055 17 6 2.1573 -1.8339 5.5121 18 6 3.5134 -1.8866 5.7748 19 6 4.4065 -1.2567 4.9282 20 6 3.9434 -0.5746 3.8186 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 4.0609 -2.2453 -4.0343 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 0.6339 -1.1019 4.2029 31 1 1.4596 -2.3257 6.1736 32 1 3.8752 -2.4195 6.6417 33 1 5.4660 -1.2975 5.1338 34 1 4.6410 -0.0822 3.1575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238471319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:58 Heat of formation + Delta-G solvation = 10.911854 kcal Electronic energy + Delta-G solvation = -14256.295365 eV Core-core repulsion = 11960.278340 eV Total energy + Delta-G solvation = -2296.017025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11646 -36.57194 -33.04859 -31.83216 -30.72294 -29.05685 -27.21032 -24.66761 -22.86236 -22.38923 -20.88505 -19.67804 -16.67616 -16.14638 -15.19792 -15.06108 -14.72117 -14.40038 -13.87083 -13.31441 -13.11097 -12.72034 -12.58231 -12.12444 -11.75611 -11.66708 -11.44157 -11.15572 -10.85227 -10.73216 -10.54680 -10.37376 -10.01416 -9.25689 -8.96203 -8.75765 -8.58381 -8.20867 -7.52245 -5.83693 -3.81034 1.51185 1.57481 3.43458 3.47051 3.50573 3.93523 4.60173 4.91109 5.00724 5.10176 5.19179 5.28224 5.53241 5.57549 5.66788 5.74599 5.84625 5.88844 6.00686 6.06087 6.20232 6.23972 6.45800 6.59372 6.64442 6.66219 6.87154 7.05347 7.17032 7.59014 7.72379 8.05106 8.10256 8.21103 8.64531 9.23720 9.79828 11.28540 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.007491 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.453311 B = 3737.159392 C = 4570.045768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.658 5.658 14 C 0.096 3.904 15 C -0.070 4.070 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.095 4.095 21 H 0.037 0.963 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.257 0.743 27 H 0.332 0.668 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 2.230 15.472 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.075 0.925 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.206 1.206 13 N -0.287 5.287 14 C -0.034 4.034 15 C -0.071 4.071 16 C -0.137 4.137 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.113 4.113 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.149 0.851 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.697 2.230 15.124 15.524 hybrid contribution 0.087 -0.008 0.094 0.128 sum -2.610 2.222 15.218 15.599 Atomic orbital electron populations 1.22558 0.99552 1.01207 1.00606 1.21829 0.89884 0.98193 0.92201 0.91729 1.19110 0.96232 0.95400 0.89666 1.21106 0.91905 1.32848 1.06715 0.92461 1.25004 0.97952 0.95955 0.96069 1.69954 1.35242 1.37004 1.12411 0.86702 0.86494 0.77906 0.77094 1.20386 1.21647 1.20578 1.60602 1.57887 1.08323 1.01929 1.20941 0.98519 0.95186 0.88704 1.19951 0.93653 0.97889 0.95594 1.21037 0.99262 0.98234 0.95136 1.21043 0.95616 0.99853 0.97792 1.21072 0.93532 1.00309 0.99759 1.21152 0.99480 0.98193 0.95272 1.21125 0.95255 0.98534 0.96435 0.94434 0.92438 0.93031 0.96522 0.96443 0.93320 0.85067 0.95517 0.90542 0.86598 0.86550 0.86604 0.86342 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.16 37.15 0.34 -2.70 16 2 C 0.09 1.79 2.53 -67.71 -0.17 1.62 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.93 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.49 -13.93 8.84 -34.44 -0.30 -14.23 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.82 13.29 55.43 0.74 -27.09 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.66 -12.51 5.95 -107.99 -0.64 -13.15 16 14 C 0.10 1.52 5.61 -4.97 -0.03 1.49 16 15 C -0.07 -1.05 5.39 -104.62 -0.56 -1.62 16 16 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 17 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 18 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 19 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 20 C -0.09 -1.42 9.70 -39.58 -0.38 -1.80 16 21 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.33 6.04 8.46 -39.29 -0.33 5.71 16 28 H 0.03 0.39 7.38 -51.93 -0.38 0.00 16 29 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -30.89 289.28 -8.75 -39.64 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.27 Total: 1.79 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.92 Total: -22.96 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.09 Total: -40.24 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.89 -8.75 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238471319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.557 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds