Wall clock time and date at job start Mon Mar 30 2020 02:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 H 1.07993 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46803 * 60.00539 * 9 7 5 11 11 H 1.48499 * 109.47065 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00184 * 9 7 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 C 1.38233 * 120.00099 * 269.72682 * 15 14 13 17 17 C 1.38239 * 119.99655 * 179.76882 * 16 15 14 18 18 C 1.38230 * 120.00228 * 0.50243 * 17 16 15 19 19 C 1.38238 * 119.99995 * 359.75228 * 18 17 16 20 20 C 1.38238 * 120.00072 * 359.97438 * 19 18 17 21 21 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 22 22 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99995 * 38.95403 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.08003 * 119.99927 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.99431 * 180.23215 * 17 16 15 32 32 H 1.07997 * 120.00220 * 179.73036 * 18 17 16 33 33 H 1.08002 * 119.99952 * 179.97438 * 19 18 17 34 34 H 1.07991 * 120.00062 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8378 -3.2993 9 14 6.0921 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2269 11 1 6.5871 -1.7613 -3.6490 12 1 6.4845 0.3698 -2.4971 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5872 -0.5217 3.5561 16 6 1.6938 -1.1471 4.4055 17 6 2.1573 -1.8339 5.5121 18 6 3.5134 -1.8866 5.7748 19 6 4.4065 -1.2567 4.9282 20 6 3.9434 -0.5746 3.8186 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 4.0609 -2.2453 -4.0343 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 0.6339 -1.1019 4.2029 31 1 1.4596 -2.3257 6.1736 32 1 3.8752 -2.4195 6.6417 33 1 5.4660 -1.2975 5.1338 34 1 4.6410 -0.0822 3.1575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238471319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:57 Heat of formation + Delta-G solvation = -7.560590 kcal Electronic energy + Delta-G solvation = -14257.096390 eV Core-core repulsion = 11960.278340 eV Total energy + Delta-G solvation = -2296.818050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16342 -38.09088 -34.95625 -33.40011 -31.70900 -30.49872 -29.05656 -25.98146 -24.83592 -23.39196 -21.98950 -21.36777 -18.39515 -17.65292 -16.60675 -16.39915 -16.14390 -16.01048 -15.22873 -14.62564 -14.34631 -14.19115 -13.86866 -13.49537 -13.46835 -13.19280 -13.04205 -12.73559 -12.52397 -12.40125 -11.97160 -11.82100 -11.74545 -11.13421 -11.10609 -10.48163 -9.75660 -9.63760 -8.98049 -8.09227 -6.13933 0.49556 0.57059 1.40560 1.43904 1.51161 2.47514 2.89561 3.23783 3.61315 3.95537 4.03684 4.22486 4.24477 4.34299 4.41106 4.50560 4.59282 4.67158 4.76834 4.84400 4.97661 5.17953 5.22463 5.24019 5.28021 5.50503 5.61920 5.67082 5.67838 5.81277 5.90560 6.18272 6.33547 6.48663 6.71254 6.99746 7.51338 9.02846 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.007491 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.453311 B = 3737.159392 C = 4570.045768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 H 0.060 0.940 4 C 0.037 3.963 5 C -0.499 4.499 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.676 5.676 14 C 0.103 3.897 15 C -0.090 4.090 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.120 4.120 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.052 0.948 24 H -0.011 1.011 25 H -0.007 1.007 26 H 0.259 0.741 27 H 0.335 0.665 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 2.185 17.558 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.078 0.922 4 C 0.000 4.000 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.307 5.307 14 C -0.025 4.025 15 C -0.091 4.091 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.139 4.139 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.007 0.993 25 H 0.012 0.988 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.638 2.200 17.228 17.567 hybrid contribution 0.058 -0.019 -0.495 0.499 sum -2.580 2.181 16.732 17.070 Atomic orbital electron populations 1.22406 0.96572 1.01786 1.02043 1.21490 0.92221 0.96878 0.90565 0.92194 1.19000 0.95113 0.94146 0.91752 1.21458 0.93454 1.32373 1.06473 0.92686 1.25874 1.02963 0.95698 0.95789 1.70087 1.37150 1.38024 1.13087 0.85633 0.80560 0.78402 0.77195 1.19859 1.21158 1.19408 1.60418 1.58376 1.09240 1.02680 1.20866 0.99327 0.94388 0.87956 1.19938 0.94056 0.99182 0.95876 1.21262 0.99828 0.97908 0.95194 1.21435 0.96314 0.99039 0.97532 1.21466 0.93478 0.99494 1.00134 1.21408 1.00798 0.97853 0.94819 1.21208 0.95353 0.99844 0.97498 0.91508 0.92425 0.92893 0.99259 0.98849 0.93275 0.84656 0.93570 0.91658 0.85065 0.83669 0.83723 0.84699 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 9.16 71.98 0.66 -4.84 16 2 C 0.10 3.99 2.53 44.91 0.11 4.11 16 3 H 0.06 2.48 7.80 -2.39 -0.02 2.46 16 4 C 0.04 1.99 4.65 29.85 0.14 2.13 16 5 C -0.50 -29.10 8.84 25.60 0.23 -28.87 16 6 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 9 Si 0.96 46.42 29.54 68.60 2.03 48.45 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 N -0.68 -25.62 5.95 -495.56 -2.95 -28.57 16 14 C 0.10 3.19 5.61 85.56 0.48 3.67 16 15 C -0.09 -2.62 5.39 -19.86 -0.11 -2.72 16 16 C -0.12 -3.00 9.70 22.27 0.22 -2.78 16 17 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 18 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 19 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 20 C -0.12 -3.55 9.70 22.27 0.22 -3.34 16 21 H 0.07 1.79 7.45 -2.39 -0.02 1.77 16 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 26 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.34 12.07 8.46 -89.70 -0.76 11.31 16 28 H 0.05 1.24 7.38 -2.39 -0.02 1.23 16 29 H 0.06 2.13 8.00 -2.39 -0.02 2.11 16 30 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.11 3.44 8.06 -2.92 -0.02 3.42 16 Total: -1.00 -66.85 289.28 2.74 -64.11 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.30 Total: 15.25 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 3.08 Total: -40.48 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.67 Total: -87.33 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -66.85 2.74 -64.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238471319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.549 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds