Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.36090 * 126.81351 * 2 1 4 4 H 0.97002 * 126.11286 * 359.97438 * 3 2 1 5 5 C 1.35969 * 107.77887 * 180.02562 * 3 2 1 6 6 C 1.50703 * 125.20416 * 179.97438 * 5 3 2 7 7 F 1.39896 * 109.47185 * 195.00144 * 6 5 3 8 8 F 1.39896 * 109.46978 * 315.00550 * 6 5 3 9 9 F 1.39901 * 109.46870 * 75.00357 * 6 5 3 10 10 N 1.30149 * 109.59403 * 359.72372 * 5 3 2 11 11 C 1.35974 * 109.13300 * 0.44422 * 10 5 3 12 12 C 1.41220 * 126.44022 * 179.81953 * 11 10 5 13 13 H 1.08000 * 120.00357 * 179.69265 * 12 11 10 14 14 C 1.39715 * 120.00320 * 359.69283 * 12 11 10 15 15 N 1.31019 * 119.99934 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00216 * 179.72364 * 14 12 11 17 17 H 1.48497 * 109.47172 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47241 * 120.00100 * 16 14 12 19 19 H 1.48501 * 109.47173 * 240.00017 * 16 14 12 20 20 H 1.08993 * 109.47204 * 269.98236 * 1 2 3 21 21 H 1.09002 * 109.46564 * 29.97606 * 1 2 3 22 22 H 1.08994 * 109.47131 * 149.97299 * 1 2 3 23 23 H 0.97000 * 120.00475 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3225 1.0895 0.0000 4 1 2.0377 2.0168 -0.0004 5 6 3.6079 0.6461 -0.0006 6 6 4.8308 1.5268 -0.0013 7 9 5.9536 0.7655 -0.3432 8 9 4.6636 2.5560 -0.9340 9 9 5.0103 2.0764 1.2726 10 7 3.6206 -0.6553 0.0050 11 6 2.3404 -1.1136 -0.0005 12 6 1.9335 -2.4659 -0.0008 13 1 0.8823 -2.7135 -0.0005 14 6 2.8908 -3.4835 -0.0014 15 7 4.1661 -3.1832 -0.0023 16 14 2.3526 -5.2722 0.0060 17 1 0.8693 -5.3428 0.0114 18 1 2.8756 -5.9516 -1.2064 19 1 2.8850 -5.9443 1.2185 20 1 -0.3633 -0.0003 1.0276 21 1 -0.3632 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5142 23 1 4.8308 -3.8897 -0.0024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238488772.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = -127.332683 kcal Electronic energy + Delta-G solvation = -14951.719585 eV Core-core repulsion = 11770.758987 eV Total energy + Delta-G solvation = -3180.960598 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.20853 -48.75596 -48.68219 -42.15811 -35.38543 -33.34190 -32.43978 -28.97942 -28.21925 -24.82463 -22.11101 -21.44412 -19.93366 -19.61983 -19.08747 -18.35134 -16.75694 -16.37898 -15.85285 -15.51271 -15.40655 -15.15639 -14.87133 -14.85772 -14.68854 -14.15531 -13.50055 -13.40756 -13.01107 -12.89499 -12.69724 -12.30450 -11.76731 -11.31921 -10.35882 -10.31908 -9.15665 -8.24909 -6.14109 1.07068 1.36917 1.46202 1.46858 1.61601 2.23462 2.36287 2.36771 2.75934 3.34459 3.37976 3.65558 4.45257 4.58103 4.94633 4.97803 5.18326 5.34751 5.58509 5.74783 6.32680 6.77283 6.99597 7.16437 7.72091 8.71935 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.034883 B = 0.010389 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.495043 B = 2694.422685 C = 3317.123445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.133 4.133 3 N -0.531 5.531 4 H 0.421 0.579 5 C 0.040 3.960 6 C 0.576 3.424 7 F -0.166 7.166 8 F -0.169 7.169 9 F -0.173 7.173 10 N -0.454 5.454 11 C 0.146 3.854 12 C -0.480 4.480 13 H 0.092 0.908 14 C 0.022 3.978 15 N -0.818 5.818 16 Si 0.983 3.017 17 H -0.250 1.250 18 H -0.275 1.275 19 H -0.276 1.276 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 7.173 -0.068 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.247 4.247 3 N -0.141 5.141 4 H 0.261 0.739 5 C -0.218 4.218 6 C 0.519 3.481 7 F -0.147 7.147 8 F -0.151 7.151 9 F -0.154 7.154 10 N -0.180 5.180 11 C 0.020 3.980 12 C -0.515 4.515 13 H 0.110 0.890 14 C -0.192 4.192 15 N -0.446 5.446 16 Si 0.805 3.195 17 H -0.173 1.173 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.676 6.633 -0.058 7.152 hybrid contribution -0.289 0.309 0.012 0.423 sum -2.965 6.942 -0.047 7.549 Atomic orbital electron populations 1.19863 0.84870 1.02805 1.02013 1.22037 0.94921 0.85549 1.22230 1.42116 1.04418 1.09188 1.58381 0.73937 1.22726 0.85467 0.93046 1.20610 1.16483 0.81141 0.76719 0.73749 1.93200 1.53393 1.76088 1.92038 1.93188 1.95538 1.60357 1.65973 1.93203 1.95784 1.86278 1.40152 1.71009 1.25032 1.04071 1.17872 1.18919 0.85683 0.94172 0.99204 1.18898 0.94541 0.88410 1.49699 0.88973 1.26745 0.94448 1.05319 0.92738 1.70233 1.01904 1.34994 1.37430 0.85144 0.79773 0.76625 0.77949 1.17322 1.20080 1.20116 0.91554 0.90622 0.91047 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.23 10.23 71.24 0.73 -0.50 14 2 C -0.13 -5.84 7.38 42.10 0.31 -5.53 14 3 N -0.53 -21.14 6.12 -171.60 -1.05 -22.19 14 4 H 0.42 12.71 8.96 -92.71 -0.83 11.88 14 5 C 0.04 1.87 7.39 137.93 1.02 2.89 14 6 C 0.58 22.86 3.57 71.24 0.25 23.12 14 7 F -0.17 -7.22 17.14 44.97 0.77 -6.45 14 8 F -0.17 -5.75 17.30 44.97 0.78 -4.97 14 9 F -0.17 -6.35 17.30 44.97 0.78 -5.57 14 10 N -0.45 -25.76 9.29 -179.79 -1.67 -27.43 14 11 C 0.15 8.03 6.69 39.44 0.26 8.29 14 12 C -0.48 -26.40 9.12 23.36 0.21 -26.18 14 13 H 0.09 4.63 7.35 -2.91 -0.02 4.61 14 14 C 0.02 1.18 5.49 85.17 0.47 1.65 14 15 N -0.82 -47.93 11.94 21.79 0.26 -47.67 14 16 Si 0.98 40.70 29.56 68.60 2.03 42.73 14 17 H -0.25 -9.62 7.11 99.48 0.71 -8.91 14 18 H -0.28 -11.17 7.11 99.48 0.71 -10.46 14 19 H -0.28 -11.20 7.11 99.48 0.71 -10.49 14 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 14 21 H 0.07 1.94 8.14 -2.39 -0.02 1.92 14 22 H 0.07 2.37 7.61 -2.39 -0.02 2.35 14 23 H 0.27 14.62 8.30 -92.71 -0.77 13.85 14 Total: -1.00 -66.71 228.35 5.60 -61.12 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.44 Total: 6.70 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 3.26 Total: 3.73 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -2.46 Total: -97.29 kcal Atomic # 9 Polarization: -19.32 SS G_CDS: 2.33 Total: -17.00 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -66.71 5.60 -61.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238488772.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.216 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds