Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36417 * 126.40291 * 2 1 4 4 H 0.97003 * 126.55218 * 359.97438 * 3 2 1 5 5 C 1.37537 * 106.89028 * 179.97438 * 3 2 1 6 6 C 1.39999 * 125.96705 * 179.97438 * 5 3 2 7 7 H 1.07994 * 119.99589 * 0.02562 * 6 5 3 8 8 C 1.40240 * 120.00036 * 180.02562 * 6 5 3 9 9 N 1.30686 * 119.99842 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99578 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47543 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46916 * 119.99928 * 10 8 6 13 13 H 1.48501 * 109.47013 * 239.99663 * 10 8 6 14 14 N 1.32989 * 108.07306 * 0.02562 * 5 3 2 15 15 C 1.32759 * 109.22055 * 359.72090 * 14 5 3 16 16 C 1.50705 * 125.68891 * 180.27353 * 15 14 5 17 17 F 1.39900 * 109.46697 * 270.20029 * 16 15 14 18 18 F 1.39898 * 109.47196 * 30.19629 * 16 15 14 19 19 F 1.39895 * 109.47152 * 150.20242 * 16 15 14 20 20 H 1.09002 * 109.47152 * 90.02267 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02367 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02348 * 1 2 3 23 23 H 0.96999 * 119.99750 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3166 1.0980 0.0000 4 1 2.0323 2.0254 -0.0003 5 6 3.6130 0.6386 0.0006 6 6 4.7665 1.4319 0.0003 7 1 4.6813 2.5085 -0.0001 8 6 6.0325 0.8287 0.0004 9 7 6.1355 -0.4741 0.0003 10 14 7.5715 1.8874 0.0007 11 1 7.1859 3.3213 0.0002 12 1 8.3758 1.5910 1.2134 13 1 8.3763 1.5912 -1.2116 14 7 3.5796 -0.6909 0.0004 15 6 2.3154 -1.0963 0.0058 16 6 1.8520 -2.5303 0.0132 17 9 1.7093 -2.9810 -1.3035 18 9 2.7953 -3.3218 0.6773 19 9 0.6215 -2.6193 0.6726 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8898 0.5142 23 1 7.0111 -0.8914 0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238491076.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = -130.369840 kcal Electronic energy + Delta-G solvation = -15062.743892 eV Core-core repulsion = 11881.651593 eV Total energy + Delta-G solvation = -3181.092299 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.99085 -48.54645 -48.45507 -42.07763 -35.47596 -33.28587 -32.60352 -29.11555 -27.98734 -24.65962 -22.30757 -21.65431 -19.37913 -19.25235 -19.00093 -18.25420 -16.93571 -16.34403 -15.83373 -15.41329 -15.24860 -14.97568 -14.84658 -14.69351 -14.67000 -14.10229 -13.53027 -13.44716 -13.00563 -12.84281 -12.74012 -12.45548 -11.86645 -11.16465 -10.58198 -10.07762 -9.20079 -8.39382 -6.42177 1.18916 1.45914 1.52581 1.62004 1.81533 2.25217 2.38154 2.73780 3.10494 3.36653 3.40462 3.74846 4.31086 4.43773 4.81087 4.91383 5.11107 5.25820 5.51415 5.75729 6.18991 6.33468 6.88405 7.29880 7.94894 8.56259 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.042205 B = 0.009850 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.271374 B = 2842.083157 C = 3325.561377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.040 4.040 3 N -0.598 5.598 4 H 0.421 0.579 5 C 0.349 3.651 6 C -0.488 4.488 7 H 0.101 0.899 8 C 0.031 3.969 9 N -0.790 5.790 10 Si 0.999 3.001 11 H -0.248 1.248 12 H -0.272 1.272 13 H -0.272 1.272 14 N -0.532 5.532 15 C -0.131 4.131 16 C 0.558 3.442 17 F -0.186 7.186 18 F -0.186 7.186 19 F -0.169 7.169 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 2.426 0.109 7.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.160 4.160 3 N -0.206 5.206 4 H 0.260 0.740 5 C 0.104 3.896 6 C -0.528 4.528 7 H 0.119 0.881 8 C -0.189 4.189 9 N -0.415 5.415 10 Si 0.819 3.181 11 H -0.171 1.171 12 H -0.197 1.197 13 H -0.197 1.197 14 N -0.255 5.255 15 C -0.263 4.263 16 C 0.503 3.497 17 F -0.167 7.167 18 F -0.168 7.168 19 F -0.150 7.150 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.134 1.597 0.107 6.339 hybrid contribution -0.062 0.717 -0.025 0.720 sum -6.195 2.314 0.082 6.614 Atomic orbital electron populations 1.20413 0.84819 1.04527 1.03268 1.21037 0.94785 0.86215 1.13941 1.43338 1.06367 1.08202 1.62654 0.74024 1.20448 0.84009 0.88297 0.96882 1.18658 0.88280 0.94133 1.51688 0.88145 1.26811 1.03564 0.96275 0.92204 1.70147 1.26374 1.12001 1.33012 0.84915 0.75864 0.78986 0.78315 1.17111 1.19665 1.19687 1.70974 1.16414 1.09814 1.28306 1.20490 0.94306 0.91599 1.19898 1.17138 0.74047 0.85503 0.73001 1.93134 1.95646 1.90745 1.37218 1.93127 1.65816 1.76731 1.81084 1.93053 1.44145 1.96592 1.81206 0.90445 0.89767 0.89587 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.15 10.14 71.24 0.72 -1.43 14 2 C -0.04 -1.70 7.21 41.38 0.30 -1.40 14 3 N -0.60 -25.97 6.25 -179.87 -1.12 -27.10 14 4 H 0.42 14.59 8.96 -92.71 -0.83 13.76 14 5 C 0.35 18.89 7.61 133.59 1.02 19.91 14 6 C -0.49 -25.53 9.46 23.18 0.22 -25.31 14 7 H 0.10 4.67 7.85 -2.91 -0.02 4.65 14 8 C 0.03 1.61 5.50 85.35 0.47 2.08 14 9 N -0.79 -44.79 11.90 21.88 0.26 -44.53 14 10 Si 1.00 38.18 29.56 68.60 2.03 40.21 14 11 H -0.25 -8.74 7.11 99.48 0.71 -8.04 14 12 H -0.27 -10.16 7.11 99.48 0.71 -9.45 14 13 H -0.27 -10.17 7.11 99.48 0.71 -9.47 14 14 N -0.53 -31.04 9.34 -182.21 -1.70 -32.74 14 15 C -0.13 -6.58 6.43 41.95 0.27 -6.31 14 16 C 0.56 24.84 3.48 71.24 0.25 25.09 14 17 F -0.19 -8.01 17.30 44.97 0.78 -7.23 14 18 F -0.19 -8.90 17.25 44.97 0.78 -8.13 14 19 F -0.17 -6.28 14.57 44.97 0.66 -5.62 14 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 14 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 14 22 H 0.09 2.48 5.67 -2.38 -0.01 2.46 14 23 H 0.28 14.39 8.29 -92.71 -0.77 13.62 14 Total: -1.00 -66.30 224.37 5.36 -60.94 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.45 Total: 11.57 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 3.24 Total: 12.63 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -2.57 Total: -104.37 kcal Atomic # 9 Polarization: -23.19 SS G_CDS: 2.21 Total: -20.98 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -66.30 5.36 -60.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238491076.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.430 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds