Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30603 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48505 * 109.46965 * 87.39362 * 3 2 1 5 5 H 1.48502 * 109.47322 * 207.39319 * 3 2 1 6 6 H 1.48494 * 109.47023 * 327.39542 * 3 2 1 7 7 C 1.40346 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00119 * 11.25546 * 7 2 1 9 9 C 1.40533 * 119.99515 * 191.25207 * 7 2 1 10 10 C 1.40690 * 120.56113 * 34.29659 * 9 7 2 11 11 C 1.37922 * 120.11595 * 179.97438 * 10 9 7 12 12 C 1.40226 * 120.89607 * 0.02562 * 11 10 9 13 13 C 1.38581 * 120.93171 * 0.05302 * 12 11 10 14 14 C 1.39598 * 120.23345 * 359.61731 * 13 12 11 15 15 C 1.46364 * 120.53249 * 180.32265 * 14 13 12 16 16 O 1.21375 * 120.00417 * 176.01405 * 15 14 13 17 17 O 1.36507 * 108.43063 * 180.02562 * 12 11 10 18 18 C 1.43911 * 105.52407 * 342.49420 * 17 12 11 19 19 O 1.36542 * 130.65955 * 180.02562 * 11 10 9 20 20 H 0.97000 * 120.00198 * 359.97438 * 1 2 3 21 21 H 1.08000 * 119.94363 * 359.96717 * 10 9 7 22 22 H 1.07997 * 119.87863 * 180.02562 * 13 12 11 23 23 H 1.08007 * 119.99844 * 356.01322 * 15 14 13 24 24 H 1.09005 * 110.54898 * 268.96865 * 18 17 12 25 25 H 1.08995 * 110.55655 * 146.15356 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4324 2.0782 1.3987 5 1 3.5641 1.4248 -0.6442 6 1 1.4662 2.6361 -0.7544 7 6 2.0077 -1.2155 -0.0005 8 1 1.4833 -2.1416 -0.1835 9 6 3.3928 -1.2272 0.2369 10 6 3.9741 -0.3041 1.1254 11 6 5.3344 -0.3242 1.3521 12 6 6.1583 -1.2572 0.7063 13 6 5.6286 -2.1835 -0.1779 14 6 4.2564 -2.2062 -0.4338 15 6 3.6891 -3.1863 -1.3610 16 8 2.4875 -3.2451 -1.5217 17 8 7.4450 -1.0511 1.1129 18 6 7.4610 0.2689 1.6861 19 8 6.1140 0.4570 2.1561 20 1 -0.4850 0.8400 0.0004 21 1 3.3541 0.4216 1.6307 22 1 6.2788 -2.8947 -0.6656 23 1 4.3397 -3.8572 -1.9024 24 1 7.7089 1.0121 0.9282 25 1 8.1662 0.3173 2.5158 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238688227.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = -96.052187 kcal Electronic energy + Delta-G solvation = -14520.327105 eV Core-core repulsion = 11850.286921 eV Total energy + Delta-G solvation = -2670.040185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.70829 -39.77927 -37.73271 -37.03001 -35.53340 -32.23310 -31.22383 -27.62772 -26.60737 -24.49244 -23.57004 -21.94754 -19.80057 -18.56082 -18.43689 -17.95551 -17.21382 -16.48381 -16.20939 -15.39396 -15.11378 -14.93887 -14.79147 -14.57435 -14.14701 -13.79710 -13.69383 -13.29882 -12.83430 -12.71927 -12.18632 -11.77988 -11.44122 -11.05735 -10.13428 -9.66651 -9.07560 -8.86329 -6.64841 -0.05623 0.58890 1.19301 1.29277 1.37431 1.72910 2.00131 2.12291 2.52142 2.81582 3.26398 3.74211 3.88204 3.98206 4.17979 4.38172 4.42765 4.67848 4.84493 4.88597 5.12078 5.39022 5.44023 5.58402 5.68515 6.16539 6.28362 6.58789 6.59219 7.13986 7.96013 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.013890 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.083480 B = 2015.320522 C = 2906.548610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.045 3.955 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.253 1.253 6 H -0.266 1.266 7 C -0.418 4.418 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.246 4.246 11 C 0.094 3.906 12 C -0.123 4.123 13 C 0.016 3.984 14 C -0.318 4.318 15 C 0.380 3.620 16 O -0.520 6.520 17 O -0.323 6.323 18 C 0.204 3.796 19 O -0.336 6.336 20 H 0.304 0.696 21 H 0.109 0.891 22 H 0.163 0.837 23 H 0.138 0.862 24 H 0.092 0.908 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 2.180 0.247 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.176 1.176 6 H -0.191 1.191 7 C -0.444 4.444 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.266 4.266 11 C 0.049 3.951 12 C -0.167 4.167 13 C -0.003 4.003 14 C -0.321 4.321 15 C 0.246 3.754 16 O -0.400 6.400 17 O -0.241 6.241 18 C 0.093 3.907 19 O -0.253 6.253 20 H 0.115 0.885 21 H 0.127 0.873 22 H 0.180 0.820 23 H 0.153 0.847 24 H 0.110 0.890 25 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.193 2.235 0.322 11.418 hybrid contribution -0.026 0.868 0.344 0.934 sum 11.167 3.103 0.666 11.609 Atomic orbital electron populations 1.69551 1.09278 1.32473 1.32148 1.27123 0.95585 1.04349 0.90405 0.85544 0.79621 0.76391 0.79966 1.18313 1.17650 1.19134 1.20000 0.91760 0.96239 1.36447 0.89044 1.18586 0.92439 0.89866 0.88301 1.20029 0.91098 1.08004 1.07478 1.19930 0.92782 0.91828 0.90520 1.19376 0.82831 1.05891 1.08565 1.20155 0.93215 0.95086 0.91854 1.21554 0.92484 1.08298 1.09727 1.23821 0.89588 0.82385 0.79562 1.90502 1.20864 1.67250 1.61351 1.87152 1.25310 1.34451 1.77209 1.25908 0.82932 0.83382 0.98430 1.87231 1.19708 1.64934 1.53395 0.88517 0.87343 0.81995 0.84656 0.89001 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.20 13.92 21.89 0.30 -42.89 15 2 C 0.05 2.38 5.47 85.39 0.47 2.84 15 3 Si 0.96 41.91 24.48 68.60 1.68 43.59 15 4 H -0.26 -10.81 6.72 99.48 0.67 -10.14 15 5 H -0.25 -11.31 6.71 99.48 0.67 -10.65 15 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 7 C -0.42 -23.33 8.47 23.34 0.20 -23.13 15 8 H 0.09 5.68 6.00 -2.91 -0.02 5.66 15 9 C 0.11 5.69 5.22 -19.89 -0.10 5.59 15 10 C -0.25 -11.88 7.02 22.79 0.16 -11.72 15 11 C 0.09 4.12 7.10 22.68 0.16 4.29 15 12 C -0.12 -4.91 7.13 22.83 0.16 -4.75 15 13 C 0.02 0.57 9.80 22.68 0.22 0.80 15 14 C -0.32 -13.81 6.06 -18.60 -0.11 -13.93 15 15 C 0.38 15.13 11.42 69.94 0.80 15.93 15 16 O -0.52 -26.02 14.52 -3.32 -0.05 -26.07 15 17 O -0.32 -11.12 11.40 -76.14 -0.87 -11.98 15 18 C 0.20 5.70 8.87 113.37 1.01 6.70 15 19 O -0.34 -12.82 11.40 -76.55 -0.87 -13.69 15 20 H 0.30 14.26 8.29 -92.71 -0.77 13.49 15 21 H 0.11 5.24 4.78 -2.91 -0.01 5.23 15 22 H 0.16 4.43 8.06 -2.91 -0.02 4.41 15 23 H 0.14 3.67 8.06 -2.91 -0.02 3.65 15 24 H 0.09 2.15 8.14 -2.38 -0.02 2.13 15 25 H 0.16 2.99 8.14 -2.39 -0.02 2.97 15 Total: -1.00 -65.89 224.29 4.31 -61.58 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.16 Total: 6.85 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 2.96 Total: -17.38 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.30 Total: -42.89 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -1.79 Total: -51.75 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.68 Total: 43.59 kcal Total: -65.89 4.31 -61.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238688227.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.471 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds